[med-svn] [snakemake] 05/09: ersion 3.9.1 is lacking snakemake executable - using copy from 3.9.0 created via this quilt patch to enable running build time tests

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to tag debian/3.9.1-1
in repository snakemake.

commit 1ca7ec8a34ed37312ce486fa69c584b975d5c55f
Author: Andreas Tille <tille at debian.org>
Date:   Mon Jan 9 17:34:45 2017 +0100

    ersion 3.9.1 is lacking snakemake executable - using copy from 3.9.0 created via this quilt patch to enable running build time tests
---
 debian/changelog                      |  3 ++-
 debian/patches/0006-restore-bin.patch | 28 ++++++++++++++++++++++++++++
 debian/patches/series                 |  1 +
 debian/rules                          |  4 +++-
 4 files changed, 34 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 75f3333..0a2e729 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,9 +1,10 @@
 snakemake (3.9.1-1) UNRELEASED; urgency=medium
 
+  * Team upload
   * New upstream version
   * New Build-Depends: python3-sphinx-rtd-theme
 
- -- Andreas Tille <tille at debian.org>  Mon, 09 Jan 2017 14:14:08 +0100
+ -- Andreas Tille <tille at debian.org>  Mon, 09 Jan 2017 14:39:07 +0100
 
 snakemake (3.9.0+dfsg-2) unstable; urgency=medium
 
diff --git a/debian/patches/0006-restore-bin.patch b/debian/patches/0006-restore-bin.patch
new file mode 100644
index 0000000..98cc474
--- /dev/null
+++ b/debian/patches/0006-restore-bin.patch
@@ -0,0 +1,28 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Mon, 09 Jan 2017 14:39:07 +0100
+Description: Version 3.9.1 is lacking snakemake executable - using copy
+ from 3.9.0 created via this quilt patch
+
+--- /dev/null
++++ b/bin/snakemake
+@@ -0,0 +1,20 @@
++#!/usr/bin/env python3
++# -*- coding: utf-8 -*-
++
++import os
++import sys
++
++__author__ = "Johannes Köster"
++
++# If running from within source directory,
++# add '../snakemake' to sys.path.
++_libdir = os.path.join(os.path.dirname(os.path.realpath(__file__)), '../')
++if os.path.isfile(os.path.join(_libdir, 'snakemake', '__init__.py')):
++    sys.path.insert(0, _libdir)
++
++from snakemake import main
++
++if __name__ == "__main__":
++    #import cProfile
++    #cProfile.run('main()', "snakemake.profile")
++    main()
diff --git a/debian/patches/series b/debian/patches/series
index 37cd426..1bf9663 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -3,3 +3,4 @@
 0003-Compat-fix.patch
 0004-drop_test_symlink_time_handling.patch
 0005-drop_test_symlink_temp.patch
+0006-restore-bin.patch
diff --git a/debian/rules b/debian/rules
index b379ef8..a85f48f 100755
--- a/debian/rules
+++ b/debian/rules
@@ -5,9 +5,11 @@
 
 export PYBUILD_NAME=snakemake
 export PYBUILD_DESTDIR_python3=debian/snakemake
-export PYBUILD_BEFORE_TEST_python3=cp -r {dir}/bin {dir}/tests {build_dir}
+export PYBUILD_BEFORE_TEST_python3=chmod +x {dir}/bin/snakemake; cp -r {dir}/bin {dir}/tests {build_dir}
 export PYBUILD_AFTER_TEST_python3=rm -fr {build_dir}/bin {build_dir}/tests
 
+export PATH:=$(CURDIR)/.pybuild/pythonX.Y_3.5/build/bin:$(PATH)
+
 # Force the use of python3's sphinx-build.
 export SPHINXBUILD=/usr/share/sphinx/scripts/python3/sphinx-build
 

-- 
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