[med-svn] [bamtools] branch master updated (5434ba6 -> 8c22e37)

[Andreas Tille]

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tille pushed a change to branch master
in repository bamtools.

      from  5434ba6   breaks/replace the correct version
      adds  67c9bff   Imported Upstream version 2.4.0+dfsg
       new  1e568fc   New upstream version 2.4.1+dfsg
       new  effdc52   Merge tag 'upstream/2.4.1+dfsg'
       new  eca34dc   New upstream version
       new  fdd8e47   debhelper
       new  b1b8d44   cme fix dpkg-control
       new  bf3bf5b   Refresh patches
       new  85bacc3   d/watch: version=4
       new  7864e4a   Priority: optional
       new  4b9e7b4   soversion stays at 2.4.0 (FIXME: in future versions this should be rather 2.5 without micro number)
       new  8c22e37   Upload to unstable

The 10 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                                     |   3 +-
 debian/changelog                                   |  12 ++
 debian/compat                                      |   2 +-
 debian/control                                     |   6 +-
 .../patches/0002-support-out-of-source-build.patch |  14 +--
 .../0006-Fix-Doxyfile-input-source-path.patch      |  30 -----
 debian/patches/0007-Big_Endian.patch               |  12 +-
 debian/patches/0008_Cmake_Test.patch               |   8 +-
 debian/patches/doxygen-tweak                       |  36 +-----
 debian/patches/fix_soversion.patch                 |  22 ++++
 debian/patches/gcc-6_compat                        |  20 ---
 debian/patches/series                              |   3 +-
 debian/patches/spelling                            |  17 +--
 debian/watch                                       |   2 +-
 docs/Doxyfile                                      |   8 +-
 src/api/BamAux.h                                   |   7 ++
 src/api/BamMultiReader.cpp                         |   4 +-
 src/api/CMakeLists.txt                             |   2 +-
 src/api/internal/io/HttpHeader_p.cpp               |   2 +-
 src/api/internal/io/NetUnix_p.h                    |   4 +
 src/toolkit/CMakeLists.txt                         |   2 +-
 src/toolkit/bamtools_split.cpp                     | 139 ++++++++++++++++++---
 22 files changed, 201 insertions(+), 154 deletions(-)
 delete mode 100644 debian/patches/0006-Fix-Doxyfile-input-source-path.patch
 create mode 100644 debian/patches/fix_soversion.patch
 delete mode 100644 debian/patches/gcc-6_compat

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