[med-svn] [baitfisher] 06/07: add shebang to example scripts

[Olivier Sallou]

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osallou pushed a commit to branch master
in repository baitfisher.

commit 460f724e3413638137caa2db4e98c9682012e2fa
Author: Olivier Sallou <osallou at debian.org>
Date:   Sat Jan 14 08:12:04 2017 +0000

    add shebang to example scripts
---
 debian/patches/adapt_examples.patch | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/debian/patches/adapt_examples.patch b/debian/patches/adapt_examples.patch
index 38806cd..ec40eda 100644
--- a/debian/patches/adapt_examples.patch
+++ b/debian/patches/adapt_examples.patch
@@ -6,14 +6,16 @@ Last-Updated: 2017-01-14
 Forwarded: no
 --- a/Example/Example-without-alignment-cutting/run-command
 +++ b/Example/Example-without-alignment-cutting/run-command
-@@ -1 +1 @@
+@@ -1 +1,2 @@
 -../../BaitFisher-v1.2.7 parameter.txt 1> console_output 2> console_error_output 
++#!/usr/bin/bash
 +BaitFisher parameter.txt 1> console_output 2> console_error_output 
 --- a/Example/Example-without-alignment-cutting/BaitFilter-analysis/run-BaitFilter
 +++ b/Example/Example-without-alignment-cutting/BaitFilter-analysis/run-BaitFilter
-@@ -1,6 +1,6 @@
+@@ -1,6 +1,7 @@
 -../../../BaitFilter-v1.0.5  -m ab -i ../BaitFisher-results/loci_baits.txt  -o baits_filtered_best-in-alignment_minNumBaits.txt  1> console_o_filter_bestBaits 2> console_e_filter_bestBaits
 -../../../BaitFilter-v1.0.5  -m as -i ../BaitFisher-results/loci_baits.txt  -o baits_filtered_best-in-alignment_maxNumSeq.txt    1> console_o_filter_bestSeqs  2> console_e_filter_bestSeqs
++#!/usr/bin/bash
 +BaitFilter  -m ab -i ../BaitFisher-results/loci_baits.txt  -o baits_filtered_best-in-alignment_minNumBaits.txt  1> console_o_filter_bestBaits 2> console_e_filter_bestBaits
 +BaitFilter  -m as -i ../BaitFisher-results/loci_baits.txt  -o baits_filtered_best-in-alignment_maxNumSeq.txt    1> console_o_filter_bestSeqs  2> console_e_filter_bestSeqs
  

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