[med-svn] [python-bx] branch master updated (08f9502 -> ab26b56)

[Steffen Möller]

This is an automated email from the git hooks/post-receive script.

moeller pushed a change to branch master
in repository python-bx.

      from  08f9502   Rounding up for upload
       new  e7bcf97   New upstream version 0.7.4
       new  760c425   Merge tag 'upstream/0.7.4'
       new  a706154   Version update
       new  2cc2c26   Allow generated files in
       new  76c0378   Final changes for 0.7.4
       new  9aa1429   Lintian-error free version ready to upload
       new  38f5afb   Removing generated files from upstream
       new  08b4a48   New upstream version 0.7.4
       new  ab26b56   Merge tag 'upstream/0.7.4'

The 9 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .gitignore                                       |    40 +
 .hg_archival.txt                                 |     6 -
 .hgignore                                        |    23 -
 .hgtags                                          |     1 -
 .travis.yml                                      |    25 +
 README.md                                        |    25 +
 debian/README.Debian                             |     9 +
 debian/README.source                             |     6 +
 debian/changelog                                 |    12 +-
 debian/control                                   |    19 +-
 debian/copyright                                 |     3 +
 debian/patches/no-download.patch                 |    18 +-
 debian/python-bx-tools.dirs                      |     1 +
 debian/python-bx.dirs                            |     1 +
 debian/python-bx.install                         |     1 +
 debian/python3-bx-tools.dirs                     |     1 +
 debian/python3-bx.dirs                           |     1 +
 debian/python3-bx.install                        |     1 +
 debian/rules                                     |    20 +
 debian/watch                                     |     2 +-
 distribute_setup.py                              |   546 -
 ez_setup.py                                      |   391 +
 lib/bx/_seqmapping.c                             |  5344 -------
 lib/bx/align/_core.c                             |  1673 --
 lib/bx/align/_epo.c                              | 10839 -------------
 lib/bx/align/sitemask/_cpg.c                     |  3042 ----
 lib/bx/arrays/array_tree.c                       | 16912 ---------------------
 lib/bx/arrays/bed.c                              |  2584 ----
 lib/bx/arrays/wiggle.c                           |  3684 -----
 lib/bx/bbi/bbi_file.c                            | 15626 -------------------
 lib/bx/bbi/bbi_file.pyx                          |    94 +-
 lib/bx/bbi/bigbed_file.c                         |  8876 -----------
 lib/bx/bbi/bigbed_file.pyx                       |    44 +-
 lib/bx/bbi/bigwig_file.c                         | 10167 -------------
 lib/bx/bbi/bigwig_file.pyx                       |    60 +-
 lib/bx/bbi/bigwig_tests.py                       |     8 +-
 lib/bx/bbi/bpt_file.c                            |  2868 ----
 lib/bx/bbi/cirtree_file.c                        |  3901 -----
 lib/bx/bitset.c                                  |  5871 -------
 lib/bx/intervals/cluster.c                       |  2615 ----
 lib/bx/intervals/intersection.c                  |  8477 -----------
 lib/bx/intseq/ngramcount.c                       |  2711 ----
 lib/bx/misc/_seekbzip2.c                         |  3194 ----
 lib/bx/misc/bgzf.c                               |  2331 ---
 lib/bx/motif/_pwm.c                              |  2250 ---
 lib/bx/phylo/newick_tests.py                     |     7 +-
 lib/bx/pwm/_position_weight_matrix.c             |  1620 --
 lib/bx/seq/_nib.c                                |  1922 ---
 lib/bx/seq/_twobit.c                             |  3010 ----
 lib/bx/seqmapping_tests.py                       |    15 +-
 script_tests/bnMapper_tests.py                   |     3 +-
 script_tests/maf_extract_ranges_indexed_tests.py |     2 +-
 script_tests/out_to_chain_tests.py               |     3 +-
 scripts/bnMapper.py                              |     2 +-
 setup.cfg                                        |    12 +-
 setup.py                                         |    80 +-
 56 files changed, 745 insertions(+), 120254 deletions(-)
 create mode 100644 .gitignore
 delete mode 100644 .hg_archival.txt
 delete mode 100644 .hgignore
 delete mode 100644 .hgtags
 create mode 100644 .travis.yml
 create mode 100644 README.md
 create mode 100644 debian/README.Debian
 create mode 100644 debian/README.source
 create mode 100644 debian/python-bx-tools.dirs
 create mode 100644 debian/python-bx.dirs
 create mode 100644 debian/python-bx.install
 create mode 100644 debian/python3-bx-tools.dirs
 create mode 100644 debian/python3-bx.dirs
 create mode 100644 debian/python3-bx.install
 delete mode 100644 distribute_setup.py
 create mode 100644 ez_setup.py
 delete mode 100644 lib/bx/_seqmapping.c
 delete mode 100644 lib/bx/align/_core.c
 delete mode 100644 lib/bx/align/_epo.c
 delete mode 100644 lib/bx/align/sitemask/_cpg.c
 delete mode 100644 lib/bx/arrays/array_tree.c
 delete mode 100644 lib/bx/arrays/bed.c
 delete mode 100644 lib/bx/arrays/wiggle.c
 delete mode 100644 lib/bx/bbi/bbi_file.c
 delete mode 100644 lib/bx/bbi/bigbed_file.c
 delete mode 100644 lib/bx/bbi/bigwig_file.c
 delete mode 100644 lib/bx/bbi/bpt_file.c
 delete mode 100644 lib/bx/bbi/cirtree_file.c
 delete mode 100644 lib/bx/bitset.c
 delete mode 100644 lib/bx/intervals/cluster.c
 delete mode 100644 lib/bx/intervals/intersection.c
 delete mode 100644 lib/bx/intseq/ngramcount.c
 delete mode 100644 lib/bx/misc/_seekbzip2.c
 delete mode 100644 lib/bx/misc/bgzf.c
 delete mode 100644 lib/bx/motif/_pwm.c
 delete mode 100644 lib/bx/pwm/_position_weight_matrix.c
 delete mode 100644 lib/bx/seq/_nib.c
 delete mode 100644 lib/bx/seq/_twobit.c

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-bx.git