[med-svn] [python-bx] branch upstream updated (1a5adf5 -> 08b4a48)

[Steffen Möller]

This is an automated email from the git hooks/post-receive script.

moeller pushed a change to branch upstream
in repository python-bx.

      from  1a5adf5   Imported Upstream version 0.7.2+20150623
      adds  e7bcf97   New upstream version 0.7.4
      adds  38f5afb   Removing generated files from upstream
      adds  08b4a48   New upstream version 0.7.4

No new revisions were added by this update.

Summary of changes:
 .hgignore => .gitignore                          |     5 +-
 .hg_archival.txt                                 |     6 -
 .hgtags                                          |     1 -
 .travis.yml                                      |    25 +
 README.md                                        |    25 +
 distribute_setup.py                              |   546 -
 ez_setup.py                                      |   391 +
 lib/bx/_seqmapping.c                             |  5344 -------
 lib/bx/align/_core.c                             |  1673 --
 lib/bx/align/_epo.c                              | 10839 -------------
 lib/bx/align/sitemask/_cpg.c                     |  3042 ----
 lib/bx/arrays/array_tree.c                       | 16912 ---------------------
 lib/bx/arrays/bed.c                              |  2584 ----
 lib/bx/arrays/wiggle.c                           |  3684 -----
 lib/bx/bbi/bbi_file.c                            | 15626 -------------------
 lib/bx/bbi/bbi_file.pyx                          |    94 +-
 lib/bx/bbi/bigbed_file.c                         |  8876 -----------
 lib/bx/bbi/bigbed_file.pyx                       |    44 +-
 lib/bx/bbi/bigwig_file.c                         | 10167 -------------
 lib/bx/bbi/bigwig_file.pyx                       |    60 +-
 lib/bx/bbi/bigwig_tests.py                       |     8 +-
 lib/bx/bbi/bpt_file.c                            |  2868 ----
 lib/bx/bbi/cirtree_file.c                        |  3901 -----
 lib/bx/bitset.c                                  |  5871 -------
 lib/bx/intervals/cluster.c                       |  2615 ----
 lib/bx/intervals/intersection.c                  |  8477 -----------
 lib/bx/intseq/ngramcount.c                       |  2711 ----
 lib/bx/misc/_seekbzip2.c                         |  3194 ----
 lib/bx/misc/bgzf.c                               |  2331 ---
 lib/bx/motif/_pwm.c                              |  2250 ---
 lib/bx/phylo/newick_tests.py                     |     7 +-
 lib/bx/pwm/_position_weight_matrix.c             |  1620 --
 lib/bx/seq/_nib.c                                |  1922 ---
 lib/bx/seq/_twobit.c                             |  3010 ----
 lib/bx/seqmapping_tests.py                       |    15 +-
 script_tests/bnMapper_tests.py                   |     3 +-
 script_tests/maf_extract_ranges_indexed_tests.py |     2 +-
 script_tests/out_to_chain_tests.py               |     3 +-
 scripts/bnMapper.py                              |     2 +-
 setup.cfg                                        |    12 +-
 setup.py                                         |    80 +-
 41 files changed, 624 insertions(+), 120222 deletions(-)
 rename .hgignore => .gitignore (89%)
 delete mode 100644 .hg_archival.txt
 delete mode 100644 .hgtags
 create mode 100644 .travis.yml
 create mode 100644 README.md
 delete mode 100644 distribute_setup.py
 create mode 100644 ez_setup.py
 delete mode 100644 lib/bx/_seqmapping.c
 delete mode 100644 lib/bx/align/_core.c
 delete mode 100644 lib/bx/align/_epo.c
 delete mode 100644 lib/bx/align/sitemask/_cpg.c
 delete mode 100644 lib/bx/arrays/array_tree.c
 delete mode 100644 lib/bx/arrays/bed.c
 delete mode 100644 lib/bx/arrays/wiggle.c
 delete mode 100644 lib/bx/bbi/bbi_file.c
 delete mode 100644 lib/bx/bbi/bigbed_file.c
 delete mode 100644 lib/bx/bbi/bigwig_file.c
 delete mode 100644 lib/bx/bbi/bpt_file.c
 delete mode 100644 lib/bx/bbi/cirtree_file.c
 delete mode 100644 lib/bx/bitset.c
 delete mode 100644 lib/bx/intervals/cluster.c
 delete mode 100644 lib/bx/intervals/intersection.c
 delete mode 100644 lib/bx/intseq/ngramcount.c
 delete mode 100644 lib/bx/misc/_seekbzip2.c
 delete mode 100644 lib/bx/misc/bgzf.c
 delete mode 100644 lib/bx/motif/_pwm.c
 delete mode 100644 lib/bx/pwm/_position_weight_matrix.c
 delete mode 100644 lib/bx/seq/_nib.c
 delete mode 100644 lib/bx/seq/_twobit.c

-- 
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