[med-svn] [bart] annotated tag v0.4.00 created (now 97890b6)

Martin Uecker uecker-guest at moszumanska.debian.org
Sat Jan 14 15:23:02 UTC 2017


This is an automated email from the git hooks/post-receive script.

uecker-guest pushed a change to annotated tag v0.4.00
in repository bart.

        at  97890b6   (tag)
   tagging  f236631b70a32454a0604a738282f27bc5ffe849 (commit)
  replaces  v0.3.01
 tagged by  Martin Uecker
        on  Wed Dec 21 22:49:49 2016 +0100

- Log -----------------------------------------------------------------
version 0.4.00

Changes:
	- new tools: copy, squeeze, flatten, delta, zexpj, invert
	- show tool: option to use custom number formatting
	- poisson: option to specify random seed in poisson (David Smith)
	- threshold: hard threshold option
	- join: append mode
	- nufft: nudft option
	- nufft: randshift for nufft
	- pics: batch mode
	- pics: FT as sparsity transform
	- nrmse: auto_scale option
	- fmac tool: if only two args are specified then squash-and-sum <input1>
	- remove rsense tool
	- support for cmake (Hans Johnson)
	- rename vars.(sh|m) to startup.(sh|m)
	- more efficient Matlab interface (Tim Loderhose)
	- write BART version and command line into created files
	- change fftw to use 64-bit interface
	- phase out old wavelet2 code
	- library: phase cycling for nufft
	- library: support weights in toeplitz mode
	- library: fmac operator
	- library: cabs: complex magnitude
	- library: md_compare
	- library: thomas algorithm
	- library: inital spline code
	- many other bug fixes and enhancements
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David Smith (1):
      add option to specify random seed in poisson (#74)

Frank Ong (5):
      fix openblas with macports
      replace usr with  for macports install
      fix macports openblas library warning
      change fftw to use 64-bit interface
      add phase cycling for nufft (#71)

Hans Johnson (24):
      ENH: Add initial cmake build script (#51)
      ENH: Add a robust FindOpenBLAS.cmake file
      ENH: Add a robust FindLAPACKE.cmake file
      ENH: Add a robust FindATLAS.cmake file
      ENH: Provide support to build against vendor supplied lapack implementations
      SQPE FindAtlas fixes.
      SQME findATLAST
      SQME FindOpenBLAS
      ENH: Improved lapack, ATLAS, and OpenBLAS support
      ENH: Improve C99 compiler identification
      DOC: Provide some documentation for building BART
      COMP: Depend on Fortran if LINALG_VENDOR="LAPACKE"
      COMP: Add Stage 2 build for bart binaries
      STYLE: Sanity check that misc/cppmap.h is not needed
      COMP: Ease syncronization of Makefile & CMake
      ENH: Added optional matlab dependant functions
      ENH: Implement ISMRMRD support for reconstructions
      ENH: Allow building of tarballs from CMakeLists.txt.
      COMP: Add ability to generate doxygen files.
      COMP: Add custom target for building bart.syms file in cmake.
      COMP: Add installation rules for bart.
      ENH: Add ability to automatically generate doc/commands.txt
      DOC: Add some documentation for common failure case
      COMP: Fix linker dependancies

Jon Tamir (37):
      update copyright
      test on osx
      move regularization options to separate file
      travis: run tests on mac build
      Merge pull request #38 from mrirecon/utests2
      test frank's homebrew install
      pattern: use estimate_pattern_flags
      estimate_pattern now takes flags as input
      unit tests for estimate_pattern
      travis: add numpy/scipy and remove homebrew test (moved to separate repo)
      add test for python read/writecfl
      add test for join tool
      simplify md_zwavg
      add num_init() call to standalone tools (#48)
      Revert "simplify md_zwavg"
      add proper test arrays with 0 entries
      rename wavg to avg, add md_zavg, add test for unweighted avg
      mip: don't do abs by default
      add invert tool
      remove extra assert header
      mip: fix bug with abs option
      README: minor
      reshape: fix printf
      twixread: change debug level and show -A in help
      admm: fix calculation of s norm (broken in 79fa31eb)
      admm: make conjgrad tolerance configurable
      missing SET_TYPEID
      add tool zexpj for complex exponential
      add squeeze tool
      don't hide some options
      threshold: add hard threshold option
      add flatten tool
      add call to num_init()
      indents
      fmac tool: if only two args are specified then squash-and-sum <input1>
      show tool: option to use custom number formatting
      make custom Makefiles dir and README for explanation (#73)

Jonathan Tamir (2):
      lowrank: fix call to csyrk
      make estimate_pattern_flags function

Joseph Y Cheng (1):
      don't re-init cuplan every time (#69)

Martin Uecker (215):
      admm: coding style
      fix const for conjgrad_hist_prealloc
      do not use md-functions in admm.c
      admm: Aop_data can be zero
      simplify handling of biases
      write BART version and command line into created files
      minor
      there is no reason data must be non-null
      use array notation in iter2
      does not exit
      minor improvements lad/lsqr
      _Bool -> bool, _Complex -> complex in c file
      make pocs interface more standard
      minor
      use boolean operator
      rewrite blas/lapack interface
      use openblas on mac os x, fix build testing
      rewrite batch_svthresh
      move
      comment
      use union instead of type-punning with pointer cast
      update utests
      Merge pull request #32 from mrirecon/lapack
      cleanup nlinv
      update README
      use config struct for nlinv
      remove useless casts
      xfree, XFREE, PTR_FREE, PTR_PASS
      add debug_backtrace
      use simpler implementation for free checks
      don't use -rdynamic on MacOSX
      rewrite test for parallel make
      add some missing PTR_PASS
      integrate utests into main build system
      add missing file
      properly generate dependencies
      use our own unit test macros
      coding style
      move and rename stuff
      run tests from proper function
      remove utests/README.md
      rename data file
      a bit simpler to use
      use linker script to collect unit tests
      use PTR_FREE
      utests: be more optimistic
      utests: be more verbose
      use shell script to assemble list of unit tests
      Merge pull request #37 from mrirecon/opt-reg
      use variable instead of file (makes parallel make work)
      add some color
      remove some unnecessary includes
      add initial spline code
      export bernstein
      missing copyright header
      add casts to avoid warnings for OpenBLAS
      remove unnecessary struct members
      ops: fix input and output types
      fix type error in nufft
      missing PTR_PASS
      convert more void* to iter_conf
      operators: replace void pointers
      operators from iter2 functios
      operators for lsqr
      replace README on GitHub with a link to the homepage
      Merge pull request #39 from frankong/master
      Merge pull request #41 from mrirecon/pattern-flags
      add information for contributors
      use cppwrap instead of redefined __VLA
      Merge pull request #42 from sidward/master
      README fixes
      fix formatting, improve readability
      simplify md_calc_fmac_dims to md_merge_dims, restore fmac formatting
      remove duplicate option
      move merge_dims to multind.c
      PTR_FREE
      start to document coding style
      document use of debugger
      rename vars.(sh|m) to startup.(sh|m)
      move python/matlab scripts into subdirectories
      add memory accounting and cache
      refactor gpuops
      PTR_PASS/PTR_FREE in fft-cuda.c
      guard omp includes
      improve debugging.txt
      document build system
      markdown compatibility
      nufft: use OPT macros
      track inputs + outputs
      PTR_PASS
      remove Mac OS X build testing for now
      add float vector options
      OPT macros + copyright
      option formatting fix
      Merge pull request #47 from timlod/master
      cc: reformat options
      fix writing of .hdr files
      rename sf to specfun
      PTR_PASS
      pics: remove unneeded headers
      debug_trace
      convert symbols
      add tracing to operators
      add auto_scale option to nrmse
      fix broken test
      add nrmse scale test
      Merge branch 'profile'
      Revert "remove Mac OS X build testing for now"
      add thomas algorithm
      test for thomas algorithm
      update MacOS X instructions (thanks to Jakob Asslaender)
      copyright
      renme la.[ch] to linalg.[ch]
      remove deprecated function fftmodk
      move INSTALL.md to doc/cmake_building.txt
      Merge branch 'AllowVendorSuppliedLAPACK' (closes #53)
      add optimization for md_axpy, and improve debug info
      move optimize_nop to optimize.[ch]
      change interface to optimize_nop
      move use_gpu
      optimization fixes, and improvements
      use generic optimization framework for md_copy/md_clear
      gpu fix
      change debug level for MD time
      add md_compare
      unit tests for multind
      utest for md_zmatmul
      fix for md_circular_swap
      utest for md_circular_swap
      use generic optimization framework for md_swap..
      GPU system tests
      add test for weights
      add test for weights on GPU
      convoaa: don't use vecops
      remove functions from vecops only needed for vec_iter
      md_free takes const void* ptr
      operator inferace to sense recon
      initialize unknown in itop
      pics: use sense_recon_create
      debug output for toeplitz mode
      support weights in toeplitz mode
      operators: add ioflags
      add axpy back to vecops
      add (two) shared pointer implementations
      ops/linops: refactor memory management
      UNCONST
      Merge pull request #56 from hjmjohnson/AddSecondStageBuild
      admm: minor changes
      admm: untangle history
      admm: minor changes
      admm: make dynamic rho independent from fast
      relax test criterium
      rename rvc linop_realval
      improve linop API consistency (closes #64)
      no automatic python test
      CAST_UP/CAST_DOWN macros with run-time checking of down-casts
      admm: refactor xupdate
      merge biases into iter2 interface
      introduce monitor object
      do not use vops->dot in admm
      monitor: add history call-back
      monitor: make objective value and residuum accessible
      admm: use monitor to record history
      add missing extern
      nudft
      add nudft option to nufft
      create default normal operator
      add nudft tests
      gpu reco
      make existence of operator_gpu_wrapper independent from USE_CUDA
      add gpu option to lsqr
      new gpu mode
      remove old GPU code path
      lsqr: remove old GPU code path
      remove use_gpu from operators
      debug messages for GPU
      implement lad2_create
      use lad2_create in sense_recon_create
      eliminate grecon and rsense
      remove sense_recon
      minor
      lazy cufft plans
      fftw measure
      lazy cufft 2
      change gpu initialization
      non-gpu build fix
      CAST_UP/CAST_DOWN
      warmstart
      ops: copy_wrapper
      pics: add batch mode
      pics: test for batch mode
      missing free
      fix use after free
      optimize.c: change flags to long
      references for ADMM
      activate nested parallelism
      rof: use MAKE_ARRAY
      add FT as sparsity transform
      Linux: add libopenblas-dev to README
      do not use wavelet2
      test case
      make it possible to change xref in iter3
      remove mac tests (fail due to timeouts)
      fix warning
      add delta tool
      fix warning
      fix use of static
      test clang builds
      add fmac operator
      add append mode to join
      add copy command
      squeeze: remove singletons completely
      restrict format strings and do not use sprintf
      turn off nested parallelization
      bump version

Siddharth Iyer (13):
      Update Python wrapper + Python Readme
      Minor change to citation.
      Automated crop threshold
      style changes
      Added automate option -a
      Removed fmac3 and other stylistic changes.
      added a check to avoid divide by zero in soft_weight_singular_vectors
      TOOLBOX_PATH check in noise estimation (#44)
      covariance_function instead of calmat_svd (estvar) (#52)
      Function cabs: Complex magnitude of an array (#57)
      Updates to SURE + ESPIRiT (#58)
      Use low-resolution maps in auto-espirit (#67)
      Added auto-espirit test in ecalib.mk (#68)

timloderhose (2):
      Use single precision floats + remove allocation
      Format documentation and remove redundant line

-----------------------------------------------------------------------

This annotated tag includes the following new commits:

       new  9485ff1   admm: coding style
       new  709f416   fix const for conjgrad_hist_prealloc
       new  614697a   do not use md-functions in admm.c
       new  5a180b6   admm: Aop_data can be zero
       new  b55eb38   simplify handling of biases
       new  d18e07b   write BART version and command line into created files
       new  28b5e81   minor
       new  5edf51d   there is no reason data must be non-null
       new  fce03ae   use array notation in iter2
       new  154033a   does not exit
       new  4ec1f39   minor improvements lad/lsqr
       new  cb86058   _Bool -> bool, _Complex -> complex in c file
       new  540a1cf   make pocs interface more standard
       new  22d67f4   minor
       new  7ce7ad0   use boolean operator
       new  be8da6b   rewrite blas/lapack interface
       new  d60fd05   use openblas on mac os x, fix build testing
       new  0e1f04a   rewrite batch_svthresh
       new  9d1f129   move
       new  1cb877c   comment
       new  0397161   use union instead of type-punning with pointer cast
       new  215cfab   update utests
       new  cd4121b   Merge pull request #32 from mrirecon/lapack
       new  ea4bb61   cleanup nlinv
       new  c30300c   update README
       new  48535be   use config struct for nlinv
       new  1cc6a39   remove useless casts
       new  7768a2d   xfree, XFREE, PTR_FREE, PTR_PASS
       new  19f62e6   add debug_backtrace
       new  4abd7f0   use simpler implementation for free checks
       new  776a892   don't use -rdynamic on MacOSX
       new  891015d   rewrite test for parallel make
       new  f50100b   add some missing PTR_PASS
       new  4202e52   integrate utests into main build system
       new  7dbbf74   add missing file
       new  c06cb49   properly generate dependencies
       new  cf14772   use our own unit test macros
       new  3867aac   coding style
       new  08a88f6   move and rename stuff
       new  d37d17c   run tests from proper function
       new  fa232e4   remove utests/README.md
       new  24ad803   rename data file
       new  6c568c8   a bit simpler to use
       new  7016e2d   use linker script to collect unit tests
       new  6deae8e   use PTR_FREE
       new  2e7698a   utests: be more optimistic
       new  1cc3c4a   lowrank: fix call to csyrk
       new  2fc608c   update copyright
       new  799bc31   utests: be more verbose
       new  c4f51a0   use shell script to assemble list of unit tests
       new  c153753   test on osx
       new  e33252c   move regularization options to separate file
       new  fa25625   travis: run tests on mac build
       new  0179313   Merge pull request #37 from mrirecon/opt-reg
       new  31cbeea   use variable instead of file (makes parallel make work)
       new  cdbf667   Merge pull request #38 from mrirecon/utests2
       new  3aeeb27   add some color
       new  99d360f   remove some unnecessary includes
       new  8ba25e1   add initial spline code
       new  2a754fe   export bernstein
       new  1b16540   missing copyright header
       new  1775d73   add casts to avoid warnings for OpenBLAS
       new  c4bfb84   remove unnecessary struct members
       new  e6ddf55   ops: fix input and output types
       new  d3b49b0   fix type error in nufft
       new  0954a7e   missing PTR_PASS
       new  3880365   convert more void* to iter_conf
       new  eca407c   operators: replace void pointers
       new  68f8ec8   operators from iter2 functios
       new  ea57e19   operators for lsqr
       new  c807a5a   replace README on GitHub with a link to the homepage
       new  28b74a4   fix openblas with macports
       new  0c0ebd7   Merge pull request #39 from frankong/master
       new  f25d152   test frank's homebrew install
       new  a5b7cce   make estimate_pattern_flags function
       new  a73f046   pattern: use estimate_pattern_flags
       new  655a66e   estimate_pattern now takes flags as input
       new  b4be5e4   unit tests for estimate_pattern
       new  88ee403   Merge pull request #41 from mrirecon/pattern-flags
       new  978ac93   travis: add numpy/scipy and remove homebrew test (moved to separate repo)
       new  60d049d   add test for python read/writecfl
       new  92f4e31   Update Python wrapper + Python Readme
       new  f8d32ab   Minor change to citation.
       new  54e09a4   Automated crop threshold
       new  812b298   add information for contributors
       new  af991df   use cppwrap instead of redefined __VLA
       new  f6950cb   style changes
       new  9e8a95f   Added automate option -a
       new  cdf8f20   Removed fmac3 and other stylistic changes.
       new  8da691e   Merge pull request #42 from sidward/master
       new  694f2b0   README fixes
       new  56e3f08   fix formatting, improve readability
       new  fb30579   simplify md_calc_fmac_dims to md_merge_dims, restore fmac formatting
       new  7c5a563   remove duplicate option
       new  91f5922   move merge_dims to multind.c
       new  68179fc   PTR_FREE
       new  8b21783   added a check to avoid divide by zero in soft_weight_singular_vectors
       new  cad4e7d   TOOLBOX_PATH check in noise estimation (#44)
       new  f1ddd3f   start to document coding style
       new  bfe4571   document use of debugger
       new  321ac2f   rename vars.(sh|m) to startup.(sh|m)
       new  242bdf7   move python/matlab scripts into subdirectories
       new  eee4314   add memory accounting and cache
       new  2977434   refactor gpuops
       new  9ede8e8   PTR_PASS/PTR_FREE in fft-cuda.c
       new  a84e70e   guard omp includes
       new  94ba8d3   improve debugging.txt
       new  c2ca95e   document build system
       new  35f1df2   markdown compatibility
       new  e713263   nufft: use OPT macros
       new  b816b6b   track inputs + outputs
       new  38046e0   PTR_PASS
       new  263c2d7   remove Mac OS X build testing for now
       new  21bcac5   add float vector options
       new  e7125f2   OPT macros + copyright
       new  19a5dd2   option formatting fix
       new  a7bf8c0   Use single precision floats + remove allocation
       new  0152fd7   Format documentation and remove redundant line
       new  69fe7df   Merge pull request #47 from timlod/master
       new  f092ea7   add test for join tool
       new  6865c4f   simplify md_zwavg
       new  e4794e5   cc: reformat options
       new  1cedc3f   add num_init() call to standalone tools (#48)
       new  938d6af   fix writing of .hdr files
       new  ed004f9   Revert "simplify md_zwavg"
       new  e242a59   add proper test arrays with 0 entries
       new  e338569   rename wavg to avg, add md_zavg, add test for unweighted avg
       new  538caec   rename sf to specfun
       new  b8804d1   PTR_PASS
       new  6b311e3   replace usr with  for macports install
       new  9ff5a49   pics: remove unneeded headers
       new  1290da4   debug_trace
       new  169e355   convert symbols
       new  b613140   add tracing to operators
       new  0d17b10   add auto_scale option to nrmse
       new  395cb7e   fix broken test
       new  a1cba19   add nrmse scale test
       new  1e56230   covariance_function instead of calmat_svd (estvar) (#52)
       new  49294e1   ENH: Add initial cmake build script (#51)
       new  7b6b170   Merge branch 'profile'
       new  be6712a   Revert "remove Mac OS X build testing for now"
       new  d870142   mip: don't do abs by default
       new  d8a7262   ENH: Add a robust FindOpenBLAS.cmake file
       new  0f97c3e   ENH: Add a robust FindLAPACKE.cmake file
       new  929a850   ENH: Add a robust FindATLAS.cmake file
       new  55bc91d   ENH: Provide support to build against vendor supplied lapack implementations
       new  9cd88a7   add thomas algorithm
       new  89add9c   test for thomas algorithm
       new  945a6b4   SQPE FindAtlas fixes.
       new  bca8caf   SQME findATLAST
       new  49cdd43   SQME FindOpenBLAS
       new  4dddd83   update MacOS X instructions (thanks to Jakob Asslaender)
       new  53c401d   copyright
       new  dccb9c2   renme la.[ch] to linalg.[ch]
       new  d585228   ENH: Improved lapack, ATLAS, and OpenBLAS support
       new  5869476   ENH: Improve C99 compiler identification
       new  dfed1c6   DOC: Provide some documentation for building BART
       new  9c4b28f   add invert tool
       new  60de19b   remove extra assert header
       new  19f44df   remove deprecated function fftmodk
       new  11b493a   move INSTALL.md to doc/cmake_building.txt
       new  459a0ea   Merge branch 'AllowVendorSuppliedLAPACK' (closes #53)
       new  7fad141   mip: fix bug with abs option
       new  1470bc7   add optimization for md_axpy, and improve debug info
       new  4136889   move optimize_nop to optimize.[ch]
       new  02c800e   change interface to optimize_nop
       new  6c36759   move use_gpu
       new  ba969f2   optimization fixes, and improvements
       new  6345058   use generic optimization framework for md_copy/md_clear
       new  2fae325   gpu fix
       new  2799ab8   change debug level for MD time
       new  7c9079a   add md_compare
       new  80e517e   unit tests for multind
       new  b5bac88   utest for md_zmatmul
       new  774d9f1   fix for md_circular_swap
       new  46b5fef   utest for md_circular_swap
       new  4894085   use generic optimization framework for md_swap..
       new  e36911d   GPU system tests
       new  771ee48   add test for weights
       new  fecf892   add test for weights on GPU
       new  bd48afe   README: minor
       new  3a8b80b   convoaa: don't use vecops
       new  a3c8ce2   remove functions from vecops only needed for vec_iter
       new  7cec7e3   md_free takes const void* ptr
       new  855243a   operator inferace to sense recon
       new  58d926d   initialize unknown in itop
       new  fd9dab9   pics: use sense_recon_create
       new  4d28f82   debug output for toeplitz mode
       new  8d23009   support weights in toeplitz mode
       new  d35d104   operators: add ioflags
       new  b0e1ded   add axpy back to vecops
       new  19e9c8e   add (two) shared pointer implementations
       new  12fca9e   ops/linops: refactor memory management
       new  d238302   UNCONST
       new  f80beb5   COMP: Depend on Fortran if LINALG_VENDOR="LAPACKE"
       new  c880754   COMP: Add Stage 2 build for bart binaries
       new  0ff121c   STYLE: Sanity check that misc/cppmap.h is not needed
       new  33ae164   COMP: Ease syncronization of Makefile & CMake
       new  2fad338   ENH: Added optional matlab dependant functions
       new  1f24aef   ENH: Implement ISMRMRD support for reconstructions
       new  fb0dc23   ENH: Allow building of tarballs from CMakeLists.txt.
       new  ac7ac06   COMP: Add ability to generate doxygen files.
       new  13d233c   COMP: Add custom target for building bart.syms file in cmake.
       new  b929657   COMP: Add installation rules for bart.
       new  26ba655   ENH: Add ability to automatically generate doc/commands.txt
       new  8f801bd   Merge pull request #56 from hjmjohnson/AddSecondStageBuild
       new  bbabf55   Function cabs: Complex magnitude of an array (#57)
       new  61d5f51   Updates to SURE + ESPIRiT (#58)
       new  81ced10   DOC: Add some documentation for common failure case
       new  ecc862b   COMP: Fix linker dependancies
       new  bad5670   fix macports openblas library warning
       new  79fa31e   admm: minor changes
       new  224049e   admm: untangle history
       new  46ee1ea   admm: minor changes
       new  2e1ad40   admm: make dynamic rho independent from fast
       new  0db6ae9   relax test criterium
       new  5c3dccf   reshape: fix printf
       new  14631ff   rename rvc linop_realval
       new  c4e4b26   improve linop API consistency (closes #64)
       new  1d1615d   no automatic python test
       new  145df11   CAST_UP/CAST_DOWN macros with run-time checking of down-casts
       new  c63646b   admm: refactor xupdate
       new  4a0d602   merge biases into iter2 interface
       new  5819b80   introduce monitor object
       new  003c76d   do not use vops->dot in admm
       new  1ad6cb9   monitor: add history call-back
       new  813338d   monitor: make objective value and residuum accessible
       new  eb9140f   admm: use monitor to record history
       new  d2a55d0   add missing extern
       new  243111c   nudft
       new  ef5ea20   add nudft option to nufft
       new  a1f1e24   create default normal operator
       new  ed85936   add nudft tests
       new  78e998d   twixread: change debug level and show -A in help
       new  c41fc6b   admm: fix calculation of s norm (broken in 79fa31eb)
       new  27ed3f3   admm: make conjgrad tolerance configurable
       new  95fe8bb   missing SET_TYPEID
       new  a7e6ba3   gpu reco
       new  627331c   make existence of operator_gpu_wrapper independent from USE_CUDA
       new  a6ac444   add gpu option to lsqr
       new  4ce20ba   new gpu mode
       new  d6dbfd0   remove old GPU code path
       new  f02e74a   lsqr: remove old GPU code path
       new  acf2b86   remove use_gpu from operators
       new  c13357c   debug messages for GPU
       new  1ffa3cd   implement lad2_create
       new  e38458e   use lad2_create in sense_recon_create
       new  54d2530   eliminate grecon and rsense
       new  96502a7   remove sense_recon
       new  700ffc1   minor
       new  1de0021   lazy cufft plans
       new  51a8a88   fftw measure
       new  42d669d   lazy cufft 2
       new  ca37bdd   change gpu initialization
       new  e535b49   non-gpu build fix
       new  e8d4c5d   CAST_UP/CAST_DOWN
       new  c4c5b25   warmstart
       new  7ee29a2   ops: copy_wrapper
       new  128cb70   pics: add batch mode
       new  54d75eb   pics: test for batch mode
       new  912db9d   missing free
       new  829bb0c   fix use after free
       new  d3aa658   optimize.c: change flags to long
       new  10f0524   references for ADMM
       new  797e6f5   Use low-resolution maps in auto-espirit (#67)
       new  4fbfaa8   Added auto-espirit test in ecalib.mk (#68)
       new  553953a   add tool zexpj for complex exponential
       new  6660991   don't re-init cuplan every time (#69)
       new  fde9a66   activate nested parallelism
       new  1d240a1   rof: use MAKE_ARRAY
       new  1e25d55   add FT as sparsity transform
       new  0c30913   Linux: add libopenblas-dev to README
       new  d69a026   do not use wavelet2
       new  6f0267e   test case
       new  f587a7e   make it possible to change xref in iter3
       new  6c62fad   remove mac tests (fail due to timeouts)
       new  eb435aa   change fftw to use 64-bit interface
       new  af6b01d   fix warning
       new  b53d15b   add delta tool
       new  a191376   fix warning
       new  2fcc7ae   fix use of static
       new  b2b764b   test clang builds
       new  98f5618   add fmac operator
       new  27be58a   add squeeze tool
       new  62989df   don't hide some options
       new  e288a6f   threshold: add hard threshold option
       new  9b60892   add flatten tool
       new  d7ed8ad   add call to num_init()
       new  ec6696b   indents
       new  9c56515   fmac tool: if only two args are specified then squash-and-sum <input1>
       new  ad2f7b7   show tool: option to use custom number formatting
       new  7725ec2   make custom Makefiles dir and README for explanation (#73)
       new  ea576e2   add phase cycling for nufft (#71)
       new  c06e2ae   add option to specify random seed in poisson (#74)
       new  5862f64   add append mode to join
       new  81e7ed6   add copy command
       new  1547e55   squeeze: remove singletons completely
       new  e3e5798   restrict format strings and do not use sprintf
       new  bbca3dc   turn off nested parallelization
       new  f236631   bump version

The 300 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/bart.git



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