[med-svn] samtools 03/03: minor fixes
Anton Khodak
anton-khodak-guest at moszumanska.debian.org
Sun Jan 15 08:45:14 UTC 2017
This is an automated email from the git hooks/post-receive script.
anton-khodak-guest pushed a commit to branch debian/unstable
in repository samtools.
commit 11b2ae7173e729dd1a78106482bcea7efadf6706
Author: Anton Khodak <anton.khodak at ukr.net>
Date: Sat Jan 14 09:01:44 2017 -0800
minor fixes
---
debian/changelog | 2 +-
debian/patches/debian-changes | 6104 +++++++++++++++++++++++++++++++++++++++++
debian/patches/series | 1 +
3 files changed, 6106 insertions(+), 1 deletion(-)
diff --git a/debian/changelog b/debian/changelog
index 62a2d41..9f14ec9 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,7 +2,7 @@ samtools (1.3.1-4) unstable; urgency=low
* CWL files added
- -- Anton Khodak <anton.khodak at ukr.net> Fri, 13 Jan 2017 06:27:27 -0800
+ -- Anton Khodak <anton.khodak at ukr.net> Fri, 13 Jan 2017 06:27:27 -0800
samtools (1.3.1-3) unstable; urgency=medium
diff --git a/debian/patches/debian-changes b/debian/patches/debian-changes
new file mode 100644
index 0000000..9ee44b8
--- /dev/null
+++ b/debian/patches/debian-changes
@@ -0,0 +1,6104 @@
+Description: <short summary of the patch>
+ TODO: Put a short summary on the line above and replace this paragraph
+ with a longer explanation of this change. Complete the meta-information
+ with other relevant fields (see below for details). To make it easier, the
+ information below has been extracted from the changelog. Adjust it or drop
+ it.
+ .
+ samtools (1.3.1-4) unstable; urgency=low
+ .
+ * CWL files added
+Author: Anton Khodak <anton.khodak at ukr.net>
+
+---
+The information above should follow the Patch Tagging Guidelines, please
+checkout http://dep.debian.net/deps/dep3/ to learn about the format. Here
+are templates for supplementary fields that you might want to add:
+
+Origin: <vendor|upstream|other>, <url of original patch>
+Bug: <url in upstream bugtracker>
+Bug-Debian: https://bugs.debian.org/<bugnumber>
+Bug-Ubuntu: https://launchpad.net/bugs/<bugnumber>
+Forwarded: <no|not-needed|url proving that it has been forwarded>
+Reviewed-By: <name and email of someone who approved the patch>
+Last-Update: 2017-01-13
+
+--- /dev/null
++++ samtools-1.3.1/aclocal.m4
+@@ -0,0 +1,292 @@
++# generated automatically by aclocal 1.15 -*- Autoconf -*-
++
++# Copyright (C) 1996-2014 Free Software Foundation, Inc.
++
++# This file is free software; the Free Software Foundation
++# gives unlimited permission to copy and/or distribute it,
++# with or without modifications, as long as this notice is preserved.
++
++# This program is distributed in the hope that it will be useful,
++# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
++# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
++# PARTICULAR PURPOSE.
++
++m4_ifndef([AC_CONFIG_MACRO_DIRS], [m4_defun([_AM_CONFIG_MACRO_DIRS], [])m4_defun([AC_CONFIG_MACRO_DIRS], [_AM_CONFIG_MACRO_DIRS($@)])])
++dnl pkg.m4 - Macros to locate and utilise pkg-config. -*- Autoconf -*-
++dnl serial 11 (pkg-config-0.29)
++dnl
++dnl Copyright © 2004 Scott James Remnant <scott at netsplit.com>.
++dnl Copyright © 2012-2015 Dan Nicholson <dbn.lists at gmail.com>
++dnl
++dnl This program is free software; you can redistribute it and/or modify
++dnl it under the terms of the GNU General Public License as published by
++dnl the Free Software Foundation; either version 2 of the License, or
++dnl (at your option) any later version.
++dnl
++dnl This program is distributed in the hope that it will be useful, but
++dnl WITHOUT ANY WARRANTY; without even the implied warranty of
++dnl MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
++dnl General Public License for more details.
++dnl
++dnl You should have received a copy of the GNU General Public License
++dnl along with this program; if not, write to the Free Software
++dnl Foundation, Inc., 59 Temple Place - Suite 330, Boston, MA
++dnl 02111-1307, USA.
++dnl
++dnl As a special exception to the GNU General Public License, if you
++dnl distribute this file as part of a program that contains a
++dnl configuration script generated by Autoconf, you may include it under
++dnl the same distribution terms that you use for the rest of that
++dnl program.
++
++dnl PKG_PREREQ(MIN-VERSION)
++dnl -----------------------
++dnl Since: 0.29
++dnl
++dnl Verify that the version of the pkg-config macros are at least
++dnl MIN-VERSION. Unlike PKG_PROG_PKG_CONFIG, which checks the user's
++dnl installed version of pkg-config, this checks the developer's version
++dnl of pkg.m4 when generating configure.
++dnl
++dnl To ensure that this macro is defined, also add:
++dnl m4_ifndef([PKG_PREREQ],
++dnl [m4_fatal([must install pkg-config 0.29 or later before running autoconf/autogen])])
++dnl
++dnl See the "Since" comment for each macro you use to see what version
++dnl of the macros you require.
++m4_defun([PKG_PREREQ],
++[m4_define([PKG_MACROS_VERSION], [0.29])
++m4_if(m4_version_compare(PKG_MACROS_VERSION, [$1]), -1,
++ [m4_fatal([pkg.m4 version $1 or higher is required but ]PKG_MACROS_VERSION[ found])])
++])dnl PKG_PREREQ
++
++dnl PKG_PROG_PKG_CONFIG([MIN-VERSION])
++dnl ----------------------------------
++dnl Since: 0.16
++dnl
++dnl Search for the pkg-config tool and set the PKG_CONFIG variable to
++dnl first found in the path. Checks that the version of pkg-config found
++dnl is at least MIN-VERSION. If MIN-VERSION is not specified, 0.9.0 is
++dnl used since that's the first version where most current features of
++dnl pkg-config existed.
++AC_DEFUN([PKG_PROG_PKG_CONFIG],
++[m4_pattern_forbid([^_?PKG_[A-Z_]+$])
++m4_pattern_allow([^PKG_CONFIG(_(PATH|LIBDIR|SYSROOT_DIR|ALLOW_SYSTEM_(CFLAGS|LIBS)))?$])
++m4_pattern_allow([^PKG_CONFIG_(DISABLE_UNINSTALLED|TOP_BUILD_DIR|DEBUG_SPEW)$])
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++AC_ARG_VAR([PKG_CONFIG_PATH], [directories to add to pkg-config's search path])
++AC_ARG_VAR([PKG_CONFIG_LIBDIR], [path overriding pkg-config's built-in search path])
++
++if test "x$ac_cv_env_PKG_CONFIG_set" != "xset"; then
++ AC_PATH_TOOL([PKG_CONFIG], [pkg-config])
++fi
++if test -n "$PKG_CONFIG"; then
++ _pkg_min_version=m4_default([$1], [0.9.0])
++ AC_MSG_CHECKING([pkg-config is at least version $_pkg_min_version])
++ if $PKG_CONFIG --atleast-pkgconfig-version $_pkg_min_version; then
++ AC_MSG_RESULT([yes])
++ else
++ AC_MSG_RESULT([no])
++ PKG_CONFIG=""
++ fi
++fi[]dnl
++])dnl PKG_PROG_PKG_CONFIG
++
++dnl PKG_CHECK_EXISTS(MODULES, [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
++dnl -------------------------------------------------------------------
++dnl Since: 0.18
++dnl
++dnl Check to see whether a particular set of modules exists. Similar to
++dnl PKG_CHECK_MODULES(), but does not set variables or print errors.
++dnl
++dnl Please remember that m4 expands AC_REQUIRE([PKG_PROG_PKG_CONFIG])
++dnl only at the first occurence in configure.ac, so if the first place
++dnl it's called might be skipped (such as if it is within an "if", you
++dnl have to call PKG_CHECK_EXISTS manually
++AC_DEFUN([PKG_CHECK_EXISTS],
++[AC_REQUIRE([PKG_PROG_PKG_CONFIG])dnl
++if test -n "$PKG_CONFIG" && \
++ AC_RUN_LOG([$PKG_CONFIG --exists --print-errors "$1"]); then
++ m4_default([$2], [:])
++m4_ifvaln([$3], [else
++ $3])dnl
++fi])
++
++dnl _PKG_CONFIG([VARIABLE], [COMMAND], [MODULES])
++dnl ---------------------------------------------
++dnl Internal wrapper calling pkg-config via PKG_CONFIG and setting
++dnl pkg_failed based on the result.
++m4_define([_PKG_CONFIG],
++[if test -n "$$1"; then
++ pkg_cv_[]$1="$$1"
++ elif test -n "$PKG_CONFIG"; then
++ PKG_CHECK_EXISTS([$3],
++ [pkg_cv_[]$1=`$PKG_CONFIG --[]$2 "$3" 2>/dev/null`
++ test "x$?" != "x0" && pkg_failed=yes ],
++ [pkg_failed=yes])
++ else
++ pkg_failed=untried
++fi[]dnl
++])dnl _PKG_CONFIG
++
++dnl _PKG_SHORT_ERRORS_SUPPORTED
++dnl ---------------------------
++dnl Internal check to see if pkg-config supports short errors.
++AC_DEFUN([_PKG_SHORT_ERRORS_SUPPORTED],
++[AC_REQUIRE([PKG_PROG_PKG_CONFIG])
++if $PKG_CONFIG --atleast-pkgconfig-version 0.20; then
++ _pkg_short_errors_supported=yes
++else
++ _pkg_short_errors_supported=no
++fi[]dnl
++])dnl _PKG_SHORT_ERRORS_SUPPORTED
++
++
++dnl PKG_CHECK_MODULES(VARIABLE-PREFIX, MODULES, [ACTION-IF-FOUND],
++dnl [ACTION-IF-NOT-FOUND])
++dnl --------------------------------------------------------------
++dnl Since: 0.4.0
++dnl
++dnl Note that if there is a possibility the first call to
++dnl PKG_CHECK_MODULES might not happen, you should be sure to include an
++dnl explicit call to PKG_PROG_PKG_CONFIG in your configure.ac
++AC_DEFUN([PKG_CHECK_MODULES],
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++AC_ARG_VAR([$1][_CFLAGS], [C compiler flags for $1, overriding pkg-config])dnl
++AC_ARG_VAR([$1][_LIBS], [linker flags for $1, overriding pkg-config])dnl
++
++pkg_failed=no
++AC_MSG_CHECKING([for $1])
++
++_PKG_CONFIG([$1][_CFLAGS], [cflags], [$2])
++_PKG_CONFIG([$1][_LIBS], [libs], [$2])
++
++m4_define([_PKG_TEXT], [Alternatively, you may set the environment variables $1[]_CFLAGS
++and $1[]_LIBS to avoid the need to call pkg-config.
++See the pkg-config man page for more details.])
++
++if test $pkg_failed = yes; then
++ AC_MSG_RESULT([no])
++ _PKG_SHORT_ERRORS_SUPPORTED
++ if test $_pkg_short_errors_supported = yes; then
++ $1[]_PKG_ERRORS=`$PKG_CONFIG --short-errors --print-errors --cflags --libs "$2" 2>&1`
++ else
++ $1[]_PKG_ERRORS=`$PKG_CONFIG --print-errors --cflags --libs "$2" 2>&1`
++ fi
++ # Put the nasty error message in config.log where it belongs
++ echo "$$1[]_PKG_ERRORS" >&AS_MESSAGE_LOG_FD
++
++ m4_default([$4], [AC_MSG_ERROR(
++[Package requirements ($2) were not met:
++
++$$1_PKG_ERRORS
++
++Consider adjusting the PKG_CONFIG_PATH environment variable if you
++installed software in a non-standard prefix.
++
++_PKG_TEXT])[]dnl
++ ])
++elif test $pkg_failed = untried; then
++ AC_MSG_RESULT([no])
++ m4_default([$4], [AC_MSG_FAILURE(
++[The pkg-config script could not be found or is too old. Make sure it
++is in your PATH or set the PKG_CONFIG environment variable to the full
++path to pkg-config.
++
++_PKG_TEXT
++
++To get pkg-config, see <http://pkg-config.freedesktop.org/>.])[]dnl
++ ])
++else
++ $1[]_CFLAGS=$pkg_cv_[]$1[]_CFLAGS
++ $1[]_LIBS=$pkg_cv_[]$1[]_LIBS
++ AC_MSG_RESULT([yes])
++ $3
++fi[]dnl
++])dnl PKG_CHECK_MODULES
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++
++dnl PKG_CHECK_MODULES_STATIC(VARIABLE-PREFIX, MODULES, [ACTION-IF-FOUND],
++dnl [ACTION-IF-NOT-FOUND])
++dnl ---------------------------------------------------------------------
++dnl Since: 0.29
++dnl
++dnl Checks for existence of MODULES and gathers its build flags with
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++dnl
++dnl Note that if there is a possibility the first call to
++dnl PKG_CHECK_MODULES_STATIC might not happen, you should be sure to
++dnl include an explicit call to PKG_PROG_PKG_CONFIG in your
++dnl configure.ac.
++AC_DEFUN([PKG_CHECK_MODULES_STATIC],
++[AC_REQUIRE([PKG_PROG_PKG_CONFIG])dnl
++_save_PKG_CONFIG=$PKG_CONFIG
++PKG_CONFIG="$PKG_CONFIG --static"
++PKG_CHECK_MODULES($@)
++PKG_CONFIG=$_save_PKG_CONFIG[]dnl
++])dnl PKG_CHECK_MODULES_STATIC
++
++
++dnl PKG_INSTALLDIR([DIRECTORY])
++dnl -------------------------
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++dnl
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++dnl should install pkg-config .pc files. By default the directory is
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++dnl DIRECTORY. The user can override through the --with-pkgconfigdir
++dnl parameter.
++AC_DEFUN([PKG_INSTALLDIR],
++[m4_pushdef([pkg_default], [m4_default([$1], ['${libdir}/pkgconfig'])])
++m4_pushdef([pkg_description],
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++AC_ARG_WITH([pkgconfigdir],
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++ [with_pkgconfigdir=]pkg_default)
++AC_SUBST([pkgconfigdir], [$with_pkgconfigdir])
++m4_popdef([pkg_default])
++m4_popdef([pkg_description])
++])dnl PKG_INSTALLDIR
++
++
++dnl PKG_NOARCH_INSTALLDIR([DIRECTORY])
++dnl --------------------------------
++dnl Since: 0.27
++dnl
++dnl Substitutes the variable noarch_pkgconfigdir as the location where a
++dnl module should install arch-independent pkg-config .pc files. By
++dnl default the directory is $datadir/pkgconfig, but the default can be
++dnl changed by passing DIRECTORY. The user can override through the
++dnl --with-noarch-pkgconfigdir parameter.
++AC_DEFUN([PKG_NOARCH_INSTALLDIR],
++[m4_pushdef([pkg_default], [m4_default([$1], ['${datadir}/pkgconfig'])])
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++AC_SUBST([noarch_pkgconfigdir], [$with_noarch_pkgconfigdir])
++m4_popdef([pkg_default])
++m4_popdef([pkg_description])
++])dnl PKG_NOARCH_INSTALLDIR
++
++
++dnl PKG_CHECK_VAR(VARIABLE, MODULE, CONFIG-VARIABLE,
++dnl [ACTION-IF-FOUND], [ACTION-IF-NOT-FOUND])
++dnl -------------------------------------------
++dnl Since: 0.28
++dnl
++dnl Retrieves the value of the pkg-config variable for the given module.
++AC_DEFUN([PKG_CHECK_VAR],
++[AC_REQUIRE([PKG_PROG_PKG_CONFIG])dnl
++AC_ARG_VAR([$1], [value of $3 for $2, overriding pkg-config])dnl
++
++_PKG_CONFIG([$1], [variable="][$3]["], [$2])
++AS_VAR_COPY([$1], [pkg_cv_][$1])
++
++AS_VAR_IF([$1], [""], [$5], [$4])dnl
++])dnl PKG_CHECK_VAR
++
++m4_include([debian/ax_with_curses.m4])
++m4_include([debian/ax_with_htslib.m4])
+--- /dev/null
++++ samtools-1.3.1/configure
+@@ -0,0 +1,5781 @@
++#! /bin/sh
++# Guess values for system-dependent variables and create Makefiles.
++# Generated by GNU Autoconf 2.69 for Samtools 1.3.1.
++#
++# Report bugs to <samtools-help at lists.sourceforge.net>.
++#
++#
++# Copyright (C) 1992-1996, 1998-2012 Free Software Foundation, Inc.
++#
++#
++# This configure script is free software; the Free Software Foundation
++# gives unlimited permission to copy, distribute and modify it.
++#
++# Portions copyright (C) 2015 Genome Research Ltd.
++#
++# This configure script is free software: you are free to change and
++# redistribute it. There is NO WARRANTY, to the extent permitted by law.
++## -------------------- ##
++## M4sh Initialization. ##
++## -------------------- ##
++
++# Be more Bourne compatible
++DUALCASE=1; export DUALCASE # for MKS sh
++if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
++ emulate sh
++ NULLCMD=:
++ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
++ # is contrary to our usage. Disable this feature.
++ alias -g '${1+"$@"}'='"$@"'
++ setopt NO_GLOB_SUBST
++else
++ case `(set -o) 2>/dev/null` in #(
++ *posix*) :
++ set -o posix ;; #(
++ *) :
++ ;;
++esac
++fi
++
++
++as_nl='
++'
++export as_nl
++# Printing a long string crashes Solaris 7 /usr/bin/printf.
++as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
++as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
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++ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
++ as_echo_n='/usr/ucb/echo -n'
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++ as_echo_n_body='eval
++ arg=$1;
++ case $arg in #(
++ *"$as_nl"*)
++ expr "X$arg" : "X\\(.*\\)$as_nl";
++ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
++ esac;
++ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
++ '
++ export as_echo_n_body
++ as_echo_n='sh -c $as_echo_n_body as_echo'
++ fi
++ export as_echo_body
++ as_echo='sh -c $as_echo_body as_echo'
++fi
++
++# The user is always right.
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++ PATH_SEPARATOR=:
++ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
++ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
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++for as_dir in $PATH
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++ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
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++
++ ;;
++esac
++# We did not find ourselves, most probably we were run as `sh COMMAND'
++# in which case we are not to be found in the path.
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++ as_myself=$0
++fi
++if test ! -f "$as_myself"; then
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++ exit 1
++fi
++
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++# suppresses any "Segmentation fault" message there. '((' could
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++do eval test x\${$as_var+set} = xset \
++ && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
++done
++PS1='$ '
++PS2='> '
++PS4='+ '
++
++# NLS nuisances.
++LC_ALL=C
++export LC_ALL
++LANGUAGE=C
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++
++# CDPATH.
++(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
++
++# Use a proper internal environment variable to ensure we don't fall
++ # into an infinite loop, continuously re-executing ourselves.
++ if test x"${_as_can_reexec}" != xno && test "x$CONFIG_SHELL" != x; then
++ _as_can_reexec=no; export _as_can_reexec;
++ # We cannot yet assume a decent shell, so we have to provide a
++# neutralization value for shells without unset; and this also
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++# Preserve -v and -x to the replacement shell.
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++ENV=/dev/null
++(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
++case $- in # ((((
++ *v*x* | *x*v* ) as_opts=-vx ;;
++ *v* ) as_opts=-v ;;
++ *x* ) as_opts=-x ;;
++ * ) as_opts= ;;
++esac
++exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
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++$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
++as_fn_exit 255
++ fi
++ # We don't want this to propagate to other subprocesses.
++ { _as_can_reexec=; unset _as_can_reexec;}
++if test "x$CONFIG_SHELL" = x; then
++ as_bourne_compatible="if test -n \"\${ZSH_VERSION+set}\" && (emulate sh) >/dev/null 2>&1; then :
++ emulate sh
++ NULLCMD=:
++ # Pre-4.2 versions of Zsh do word splitting on \${1+\"\$@\"}, which
++ # is contrary to our usage. Disable this feature.
++ alias -g '\${1+\"\$@\"}'='\"\$@\"'
++ setopt NO_GLOB_SUBST
++else
++ case \`(set -o) 2>/dev/null\` in #(
++ *posix*) :
++ set -o posix ;; #(
++ *) :
++ ;;
++esac
++fi
++"
++ as_required="as_fn_return () { (exit \$1); }
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++as_fn_ret_failure () { return 1; }
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++as_fn_failure && { exitcode=1; echo as_fn_failure succeeded.; }
++as_fn_ret_success || { exitcode=1; echo as_fn_ret_success failed.; }
++as_fn_ret_failure && { exitcode=1; echo as_fn_ret_failure succeeded.; }
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++test -x / || exit 1"
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++else
++ as_have_required=no
++fi
++ if test x$as_have_required = xyes && (eval "$as_suggested") 2>/dev/null; then :
++
++else
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++as_found=false
++for as_dir in /bin$PATH_SEPARATOR/usr/bin$PATH_SEPARATOR$PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ as_found=:
++ case $as_dir in #(
++ /*)
++ for as_base in sh bash ksh sh5; do
++ # Try only shells that exist, to save several forks.
++ as_shell=$as_dir/$as_base
++ if { test -f "$as_shell" || test -f "$as_shell.exe"; } &&
++ { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$as_shell"; } 2>/dev/null; then :
++ CONFIG_SHELL=$as_shell as_have_required=yes
++ if { $as_echo "$as_bourne_compatible""$as_suggested" | as_run=a "$as_shell"; } 2>/dev/null; then :
++ break 2
++fi
++fi
++ done;;
++ esac
++ as_found=false
++done
++$as_found || { if { test -f "$SHELL" || test -f "$SHELL.exe"; } &&
++ { $as_echo "$as_bourne_compatible""$as_required" | as_run=a "$SHELL"; } 2>/dev/null; then :
++ CONFIG_SHELL=$SHELL as_have_required=yes
++fi; }
++IFS=$as_save_IFS
++
++
++ if test "x$CONFIG_SHELL" != x; then :
++ export CONFIG_SHELL
++ # We cannot yet assume a decent shell, so we have to provide a
++# neutralization value for shells without unset; and this also
++# works around shells that cannot unset nonexistent variables.
++# Preserve -v and -x to the replacement shell.
++BASH_ENV=/dev/null
++ENV=/dev/null
++(unset BASH_ENV) >/dev/null 2>&1 && unset BASH_ENV ENV
++case $- in # ((((
++ *v*x* | *x*v* ) as_opts=-vx ;;
++ *v* ) as_opts=-v ;;
++ *x* ) as_opts=-x ;;
++ * ) as_opts= ;;
++esac
++exec $CONFIG_SHELL $as_opts "$as_myself" ${1+"$@"}
++# Admittedly, this is quite paranoid, since all the known shells bail
++# out after a failed `exec'.
++$as_echo "$0: could not re-execute with $CONFIG_SHELL" >&2
++exit 255
++fi
++
++ if test x$as_have_required = xno; then :
++ $as_echo "$0: This script requires a shell more modern than all"
++ $as_echo "$0: the shells that I found on your system."
++ if test x${ZSH_VERSION+set} = xset ; then
++ $as_echo "$0: In particular, zsh $ZSH_VERSION has bugs and should"
++ $as_echo "$0: be upgraded to zsh 4.3.4 or later."
++ else
++ $as_echo "$0: Please tell bug-autoconf at gnu.org and
++$0: samtools-help at lists.sourceforge.net about your system,
++$0: including any error possibly output before this
++$0: message. Then install a modern shell, or manually run
++$0: the script under such a shell if you do have one."
++ fi
++ exit 1
++fi
++fi
++fi
++SHELL=${CONFIG_SHELL-/bin/sh}
++export SHELL
++# Unset more variables known to interfere with behavior of common tools.
++CLICOLOR_FORCE= GREP_OPTIONS=
++unset CLICOLOR_FORCE GREP_OPTIONS
++
++## --------------------- ##
++## M4sh Shell Functions. ##
++## --------------------- ##
++# as_fn_unset VAR
++# ---------------
++# Portably unset VAR.
++as_fn_unset ()
++{
++ { eval $1=; unset $1;}
++}
++as_unset=as_fn_unset
++
++# as_fn_set_status STATUS
++# -----------------------
++# Set $? to STATUS, without forking.
++as_fn_set_status ()
++{
++ return $1
++} # as_fn_set_status
++
++# as_fn_exit STATUS
++# -----------------
++# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
++as_fn_exit ()
++{
++ set +e
++ as_fn_set_status $1
++ exit $1
++} # as_fn_exit
++
++# as_fn_mkdir_p
++# -------------
++# Create "$as_dir" as a directory, including parents if necessary.
++as_fn_mkdir_p ()
++{
++
++ case $as_dir in #(
++ -*) as_dir=./$as_dir;;
++ esac
++ test -d "$as_dir" || eval $as_mkdir_p || {
++ as_dirs=
++ while :; do
++ case $as_dir in #(
++ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
++ *) as_qdir=$as_dir;;
++ esac
++ as_dirs="'$as_qdir' $as_dirs"
++ as_dir=`$as_dirname -- "$as_dir" ||
++$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
++ X"$as_dir" : 'X\(//\)[^/]' \| \
++ X"$as_dir" : 'X\(//\)$' \| \
++ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
++$as_echo X"$as_dir" |
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
++ s/.*/./; q'`
++ test -d "$as_dir" && break
++ done
++ test -z "$as_dirs" || eval "mkdir $as_dirs"
++ } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
++
++
++} # as_fn_mkdir_p
++
++# as_fn_executable_p FILE
++# -----------------------
++# Test if FILE is an executable regular file.
++as_fn_executable_p ()
++{
++ test -f "$1" && test -x "$1"
++} # as_fn_executable_p
++# as_fn_append VAR VALUE
++# ----------------------
++# Append the text in VALUE to the end of the definition contained in VAR. Take
++# advantage of any shell optimizations that allow amortized linear growth over
++# repeated appends, instead of the typical quadratic growth present in naive
++# implementations.
++if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
++ eval 'as_fn_append ()
++ {
++ eval $1+=\$2
++ }'
++else
++ as_fn_append ()
++ {
++ eval $1=\$$1\$2
++ }
++fi # as_fn_append
++
++# as_fn_arith ARG...
++# ------------------
++# Perform arithmetic evaluation on the ARGs, and store the result in the
++# global $as_val. Take advantage of shells that can avoid forks. The arguments
++# must be portable across $(()) and expr.
++if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
++ eval 'as_fn_arith ()
++ {
++ as_val=$(( $* ))
++ }'
++else
++ as_fn_arith ()
++ {
++ as_val=`expr "$@" || test $? -eq 1`
++ }
++fi # as_fn_arith
++
++
++# as_fn_error STATUS ERROR [LINENO LOG_FD]
++# ----------------------------------------
++# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
++# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
++# script with STATUS, using 1 if that was 0.
++as_fn_error ()
++{
++ as_status=$1; test $as_status -eq 0 && as_status=1
++ if test "$4"; then
++ as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
++ $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
++ fi
++ $as_echo "$as_me: error: $2" >&2
++ as_fn_exit $as_status
++} # as_fn_error
++
++if expr a : '\(a\)' >/dev/null 2>&1 &&
++ test "X`expr 00001 : '.*\(...\)'`" = X001; then
++ as_expr=expr
++else
++ as_expr=false
++fi
++
++if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
++ as_basename=basename
++else
++ as_basename=false
++fi
++
++if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
++ as_dirname=dirname
++else
++ as_dirname=false
++fi
++
++as_me=`$as_basename -- "$0" ||
++$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
++ X"$0" : 'X\(//\)$' \| \
++ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
++$as_echo X/"$0" |
++ sed '/^.*\/\([^/][^/]*\)\/*$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\).*/{
++ s//\1/
++ q
++ }
++ s/.*/./; q'`
++
++# Avoid depending upon Character Ranges.
++as_cr_letters='abcdefghijklmnopqrstuvwxyz'
++as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
++as_cr_Letters=$as_cr_letters$as_cr_LETTERS
++as_cr_digits='0123456789'
++as_cr_alnum=$as_cr_Letters$as_cr_digits
++
++
++ as_lineno_1=$LINENO as_lineno_1a=$LINENO
++ as_lineno_2=$LINENO as_lineno_2a=$LINENO
++ eval 'test "x$as_lineno_1'$as_run'" != "x$as_lineno_2'$as_run'" &&
++ test "x`expr $as_lineno_1'$as_run' + 1`" = "x$as_lineno_2'$as_run'"' || {
++ # Blame Lee E. McMahon (1931-1989) for sed's syntax. :-)
++ sed -n '
++ p
++ /[$]LINENO/=
++ ' <$as_myself |
++ sed '
++ s/[$]LINENO.*/&-/
++ t lineno
++ b
++ :lineno
++ N
++ :loop
++ s/[$]LINENO\([^'$as_cr_alnum'_].*\n\)\(.*\)/\2\1\2/
++ t loop
++ s/-\n.*//
++ ' >$as_me.lineno &&
++ chmod +x "$as_me.lineno" ||
++ { $as_echo "$as_me: error: cannot create $as_me.lineno; rerun with a POSIX shell" >&2; as_fn_exit 1; }
++
++ # If we had to re-execute with $CONFIG_SHELL, we're ensured to have
++ # already done that, so ensure we don't try to do so again and fall
++ # in an infinite loop. This has already happened in practice.
++ _as_can_reexec=no; export _as_can_reexec
++ # Don't try to exec as it changes $[0], causing all sort of problems
++ # (the dirname of $[0] is not the place where we might find the
++ # original and so on. Autoconf is especially sensitive to this).
++ . "./$as_me.lineno"
++ # Exit status is that of the last command.
++ exit
++}
++
++ECHO_C= ECHO_N= ECHO_T=
++case `echo -n x` in #(((((
++-n*)
++ case `echo 'xy\c'` in
++ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
++ xy) ECHO_C='\c';;
++ *) echo `echo ksh88 bug on AIX 6.1` > /dev/null
++ ECHO_T=' ';;
++ esac;;
++*)
++ ECHO_N='-n';;
++esac
++
++rm -f conf$$ conf$$.exe conf$$.file
++if test -d conf$$.dir; then
++ rm -f conf$$.dir/conf$$.file
++else
++ rm -f conf$$.dir
++ mkdir conf$$.dir 2>/dev/null
++fi
++if (echo >conf$$.file) 2>/dev/null; then
++ if ln -s conf$$.file conf$$ 2>/dev/null; then
++ as_ln_s='ln -s'
++ # ... but there are two gotchas:
++ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
++ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
++ # In both cases, we have to default to `cp -pR'.
++ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
++ as_ln_s='cp -pR'
++ elif ln conf$$.file conf$$ 2>/dev/null; then
++ as_ln_s=ln
++ else
++ as_ln_s='cp -pR'
++ fi
++else
++ as_ln_s='cp -pR'
++fi
++rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
++rmdir conf$$.dir 2>/dev/null
++
++if mkdir -p . 2>/dev/null; then
++ as_mkdir_p='mkdir -p "$as_dir"'
++else
++ test -d ./-p && rmdir ./-p
++ as_mkdir_p=false
++fi
++
++as_test_x='test -x'
++as_executable_p=as_fn_executable_p
++
++# Sed expression to map a string onto a valid CPP name.
++as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
++
++# Sed expression to map a string onto a valid variable name.
++as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
++
++
++test -n "$DJDIR" || exec 7<&0 </dev/null
++exec 6>&1
++
++# Name of the host.
++# hostname on some systems (SVR3.2, old GNU/Linux) returns a bogus exit status,
++# so uname gets run too.
++ac_hostname=`(hostname || uname -n) 2>/dev/null | sed 1q`
++
++#
++# Initializations.
++#
++ac_default_prefix=/usr/local
++ac_clean_files=
++ac_config_libobj_dir=.
++LIBOBJS=
++cross_compiling=no
++subdirs=
++MFLAGS=
++MAKEFLAGS=
++
++# Identity of this package.
++PACKAGE_NAME='Samtools'
++PACKAGE_TARNAME='samtools'
++PACKAGE_VERSION='1.3.1'
++PACKAGE_STRING='Samtools 1.3.1'
++PACKAGE_BUGREPORT='samtools-help at lists.sourceforge.net'
++PACKAGE_URL='http://www.htslib.org/'
++
++ac_unique_file="bamtk.c"
++enable_option_checking=no
++ac_subst_vars='LTLIBOBJS
++LIBOBJS
++PKG_CONFIG_LIBDIR
++PKG_CONFIG_PATH
++PKG_CONFIG
++CURSES_CPPFLAGS
++CURSES_LIB
++Hinstall
++Hsource
++HTSLIB_LDFLAGS
++HTSLIB_CPPFLAGS
++HTSDIR
++subdirs
++OBJEXT
++EXEEXT
++ac_ct_CC
++CPPFLAGS
++LDFLAGS
++CFLAGS
++CC
++target_alias
++host_alias
++build_alias
++LIBS
++ECHO_T
++ECHO_N
++ECHO_C
++DEFS
++mandir
++localedir
++libdir
++psdir
++pdfdir
++dvidir
++htmldir
++infodir
++docdir
++oldincludedir
++includedir
++runstatedir
++localstatedir
++sharedstatedir
++sysconfdir
++datadir
++datarootdir
++libexecdir
++sbindir
++bindir
++program_transform_name
++prefix
++exec_prefix
++PACKAGE_URL
++PACKAGE_BUGREPORT
++PACKAGE_STRING
++PACKAGE_VERSION
++PACKAGE_TARNAME
++PACKAGE_NAME
++PATH_SEPARATOR
++SHELL'
++ac_subst_files=''
++ac_user_opts='
++enable_option_checking
++enable_largefile
++with_htslib
++with_curses
++with_ncurses
++with_ncursesw
++'
++ ac_precious_vars='build_alias
++host_alias
++target_alias
++CC
++CFLAGS
++LDFLAGS
++LIBS
++CPPFLAGS
++CURSES_LIB
++CURSES_CPPFLAGS
++PKG_CONFIG
++PKG_CONFIG_PATH
++PKG_CONFIG_LIBDIR'
++ac_subdirs_all='$HTSDIR'
++
++# Initialize some variables set by options.
++ac_init_help=
++ac_init_version=false
++ac_unrecognized_opts=
++ac_unrecognized_sep=
++# The variables have the same names as the options, with
++# dashes changed to underlines.
++cache_file=/dev/null
++exec_prefix=NONE
++no_create=
++no_recursion=
++prefix=NONE
++program_prefix=NONE
++program_suffix=NONE
++program_transform_name=s,x,x,
++silent=
++site=
++srcdir=
++verbose=
++x_includes=NONE
++x_libraries=NONE
++
++# Installation directory options.
++# These are left unexpanded so users can "make install exec_prefix=/foo"
++# and all the variables that are supposed to be based on exec_prefix
++# by default will actually change.
++# Use braces instead of parens because sh, perl, etc. also accept them.
++# (The list follows the same order as the GNU Coding Standards.)
++bindir='${exec_prefix}/bin'
++sbindir='${exec_prefix}/sbin'
++libexecdir='${exec_prefix}/libexec'
++datarootdir='${prefix}/share'
++datadir='${datarootdir}'
++sysconfdir='${prefix}/etc'
++sharedstatedir='${prefix}/com'
++localstatedir='${prefix}/var'
++runstatedir='${localstatedir}/run'
++includedir='${prefix}/include'
++oldincludedir='/usr/include'
++docdir='${datarootdir}/doc/${PACKAGE_TARNAME}'
++infodir='${datarootdir}/info'
++htmldir='${docdir}'
++dvidir='${docdir}'
++pdfdir='${docdir}'
++psdir='${docdir}'
++libdir='${exec_prefix}/lib'
++localedir='${datarootdir}/locale'
++mandir='${datarootdir}/man'
++
++ac_prev=
++ac_dashdash=
++for ac_option
++do
++ # If the previous option needs an argument, assign it.
++ if test -n "$ac_prev"; then
++ eval $ac_prev=\$ac_option
++ ac_prev=
++ continue
++ fi
++
++ case $ac_option in
++ *=?*) ac_optarg=`expr "X$ac_option" : '[^=]*=\(.*\)'` ;;
++ *=) ac_optarg= ;;
++ *) ac_optarg=yes ;;
++ esac
++
++ # Accept the important Cygnus configure options, so we can diagnose typos.
++
++ case $ac_dashdash$ac_option in
++ --)
++ ac_dashdash=yes ;;
++
++ -bindir | --bindir | --bindi | --bind | --bin | --bi)
++ ac_prev=bindir ;;
++ -bindir=* | --bindir=* | --bindi=* | --bind=* | --bin=* | --bi=*)
++ bindir=$ac_optarg ;;
++
++ -build | --build | --buil | --bui | --bu)
++ ac_prev=build_alias ;;
++ -build=* | --build=* | --buil=* | --bui=* | --bu=*)
++ build_alias=$ac_optarg ;;
++
++ -cache-file | --cache-file | --cache-fil | --cache-fi \
++ | --cache-f | --cache- | --cache | --cach | --cac | --ca | --c)
++ ac_prev=cache_file ;;
++ -cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \
++ | --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* | --c=*)
++ cache_file=$ac_optarg ;;
++
++ --config-cache | -C)
++ cache_file=config.cache ;;
++
++ -datadir | --datadir | --datadi | --datad)
++ ac_prev=datadir ;;
++ -datadir=* | --datadir=* | --datadi=* | --datad=*)
++ datadir=$ac_optarg ;;
++
++ -datarootdir | --datarootdir | --datarootdi | --datarootd | --dataroot \
++ | --dataroo | --dataro | --datar)
++ ac_prev=datarootdir ;;
++ -datarootdir=* | --datarootdir=* | --datarootdi=* | --datarootd=* \
++ | --dataroot=* | --dataroo=* | --dataro=* | --datar=*)
++ datarootdir=$ac_optarg ;;
++
++ -disable-* | --disable-*)
++ ac_useropt=`expr "x$ac_option" : 'x-*disable-\(.*\)'`
++ # Reject names that are not valid shell variable names.
++ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
++ as_fn_error $? "invalid feature name: $ac_useropt"
++ ac_useropt_orig=$ac_useropt
++ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
++ case $ac_user_opts in
++ *"
++"enable_$ac_useropt"
++"*) ;;
++ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--disable-$ac_useropt_orig"
++ ac_unrecognized_sep=', ';;
++ esac
++ eval enable_$ac_useropt=no ;;
++
++ -docdir | --docdir | --docdi | --doc | --do)
++ ac_prev=docdir ;;
++ -docdir=* | --docdir=* | --docdi=* | --doc=* | --do=*)
++ docdir=$ac_optarg ;;
++
++ -dvidir | --dvidir | --dvidi | --dvid | --dvi | --dv)
++ ac_prev=dvidir ;;
++ -dvidir=* | --dvidir=* | --dvidi=* | --dvid=* | --dvi=* | --dv=*)
++ dvidir=$ac_optarg ;;
++
++ -enable-* | --enable-*)
++ ac_useropt=`expr "x$ac_option" : 'x-*enable-\([^=]*\)'`
++ # Reject names that are not valid shell variable names.
++ expr "x$ac_useropt" : ".*[^-+._$as_cr_alnum]" >/dev/null &&
++ as_fn_error $? "invalid feature name: $ac_useropt"
++ ac_useropt_orig=$ac_useropt
++ ac_useropt=`$as_echo "$ac_useropt" | sed 's/[-+.]/_/g'`
++ case $ac_user_opts in
++ *"
++"enable_$ac_useropt"
++"*) ;;
++ *) ac_unrecognized_opts="$ac_unrecognized_opts$ac_unrecognized_sep--enable-$ac_useropt_orig"
++ ac_unrecognized_sep=', ';;
++ esac
++ eval enable_$ac_useropt=\$ac_optarg ;;
++
++ -exec-prefix | --exec_prefix | --exec-prefix | --exec-prefi \
++ | --exec-pref | --exec-pre | --exec-pr | --exec-p | --exec- \
++ | --exec | --exe | --ex)
++ ac_prev=exec_prefix ;;
++ -exec-prefix=* | --exec_prefix=* | --exec-prefix=* | --exec-prefi=* \
++ | --exec-pref=* | --exec-pre=* | --exec-pr=* | --exec-p=* | --exec-=* \
++ | --exec=* | --exe=* | --ex=*)
++ exec_prefix=$ac_optarg ;;
++
++ -gas | --gas | --ga | --g)
++ # Obsolete; use --with-gas.
++ with_gas=yes ;;
++
++ -help | --help | --hel | --he | -h)
++ ac_init_help=long ;;
++ -help=r* | --help=r* | --hel=r* | --he=r* | -hr*)
++ ac_init_help=recursive ;;
++ -help=s* | --help=s* | --hel=s* | --he=s* | -hs*)
++ ac_init_help=short ;;
++
++ -host | --host | --hos | --ho)
++ ac_prev=host_alias ;;
++ -host=* | --host=* | --hos=* | --ho=*)
++ host_alias=$ac_optarg ;;
++
++ -htmldir | --htmldir | --htmldi | --htmld | --html | --htm | --ht)
++ ac_prev=htmldir ;;
++ -htmldir=* | --htmldir=* | --htmldi=* | --htmld=* | --html=* | --htm=* \
++ | --ht=*)
++ htmldir=$ac_optarg ;;
++
++ -includedir | --includedir | --includedi | --included | --include \
++ | --includ | --inclu | --incl | --inc)
++ ac_prev=includedir ;;
++ -includedir=* | --includedir=* | --includedi=* | --included=* | --include=* \
++ | --includ=* | --inclu=* | --incl=* | --inc=*)
++ includedir=$ac_optarg ;;
++
++ -infodir | --infodir | --infodi | --infod | --info | --inf)
++ ac_prev=infodir ;;
++ -infodir=* | --infodir=* | --infodi=* | --infod=* | --info=* | --inf=*)
++ infodir=$ac_optarg ;;
++
++ -libdir | --libdir | --libdi | --libd)
++ ac_prev=libdir ;;
++ -libdir=* | --libdir=* | --libdi=* | --libd=*)
++ libdir=$ac_optarg ;;
++
++ -libexecdir | --libexecdir | --libexecdi | --libexecd | --libexec \
++ | --libexe | --libex | --libe)
++ ac_prev=libexecdir ;;
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++Copyright (C) 2012 Free Software Foundation, Inc.
++This configure script is free software; the Free Software Foundation
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++Portions copyright (C) 2015 Genome Research Ltd.
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++This configure script is free software: you are free to change and
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++ if { { ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_compile") 2>conftest.err
++ ac_status=$?
++ if test -s conftest.err; then
++ grep -v '^ *+' conftest.err >conftest.er1
++ cat conftest.er1 >&5
++ mv -f conftest.er1 conftest.err
++ fi
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; } && {
++ test -z "$ac_c_werror_flag" ||
++ test ! -s conftest.err
++ } && test -s conftest.$ac_objext; then :
++ ac_retval=0
++else
++ $as_echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_retval=1
++fi
++ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
++ as_fn_set_status $ac_retval
++
++} # ac_fn_c_try_compile
++
++# ac_fn_c_check_header_compile LINENO HEADER VAR INCLUDES
++# -------------------------------------------------------
++# Tests whether HEADER exists and can be compiled using the include files in
++# INCLUDES, setting the cache variable VAR accordingly.
++ac_fn_c_check_header_compile ()
++{
++ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for $2" >&5
++$as_echo_n "checking for $2... " >&6; }
++if eval \${$3+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++$4
++#include <$2>
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ eval "$3=yes"
++else
++ eval "$3=no"
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++fi
++eval ac_res=\$$3
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_res" >&5
++$as_echo "$ac_res" >&6; }
++ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
++
++} # ac_fn_c_check_header_compile
++
++# ac_fn_c_try_link LINENO
++# -----------------------
++# Try to link conftest.$ac_ext, and return whether this succeeded.
++ac_fn_c_try_link ()
++{
++ as_lineno=${as_lineno-"$1"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
++ rm -f conftest.$ac_objext conftest$ac_exeext
++ if { { ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_link") 2>conftest.err
++ ac_status=$?
++ if test -s conftest.err; then
++ grep -v '^ *+' conftest.err >conftest.er1
++ cat conftest.er1 >&5
++ mv -f conftest.er1 conftest.err
++ fi
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; } && {
++ test -z "$ac_c_werror_flag" ||
++ test ! -s conftest.err
++ } && test -s conftest$ac_exeext && {
++ test "$cross_compiling" = yes ||
++ test -x conftest$ac_exeext
++ }; then :
++ ac_retval=0
++else
++ $as_echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++ ac_retval=1
++fi
++ # Delete the IPA/IPO (Inter Procedural Analysis/Optimization) information
++ # created by the PGI compiler (conftest_ipa8_conftest.oo), as it would
++ # interfere with the next link command; also delete a directory that is
++ # left behind by Apple's compiler. We do this before executing the actions.
++ rm -rf conftest.dSYM conftest_ipa8_conftest.oo
++ eval $as_lineno_stack; ${as_lineno_stack:+:} unset as_lineno
++ as_fn_set_status $ac_retval
++
++} # ac_fn_c_try_link
++cat >config.log <<_ACEOF
++This file contains any messages produced by compilers while
++running configure, to aid debugging if configure makes a mistake.
++
++It was created by Samtools $as_me 1.3.1, which was
++generated by GNU Autoconf 2.69. Invocation command line was
++
++ $ $0 $@
++
++_ACEOF
++exec 5>>config.log
++{
++cat <<_ASUNAME
++## --------- ##
++## Platform. ##
++## --------- ##
++
++hostname = `(hostname || uname -n) 2>/dev/null | sed 1q`
++uname -m = `(uname -m) 2>/dev/null || echo unknown`
++uname -r = `(uname -r) 2>/dev/null || echo unknown`
++uname -s = `(uname -s) 2>/dev/null || echo unknown`
++uname -v = `(uname -v) 2>/dev/null || echo unknown`
++
++/usr/bin/uname -p = `(/usr/bin/uname -p) 2>/dev/null || echo unknown`
++/bin/uname -X = `(/bin/uname -X) 2>/dev/null || echo unknown`
++
++/bin/arch = `(/bin/arch) 2>/dev/null || echo unknown`
++/usr/bin/arch -k = `(/usr/bin/arch -k) 2>/dev/null || echo unknown`
++/usr/convex/getsysinfo = `(/usr/convex/getsysinfo) 2>/dev/null || echo unknown`
++/usr/bin/hostinfo = `(/usr/bin/hostinfo) 2>/dev/null || echo unknown`
++/bin/machine = `(/bin/machine) 2>/dev/null || echo unknown`
++/usr/bin/oslevel = `(/usr/bin/oslevel) 2>/dev/null || echo unknown`
++/bin/universe = `(/bin/universe) 2>/dev/null || echo unknown`
++
++_ASUNAME
++
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ $as_echo "PATH: $as_dir"
++ done
++IFS=$as_save_IFS
++
++} >&5
++
++cat >&5 <<_ACEOF
++
++
++## ----------- ##
++## Core tests. ##
++## ----------- ##
++
++_ACEOF
++
++
++# Keep a trace of the command line.
++# Strip out --no-create and --no-recursion so they do not pile up.
++# Strip out --silent because we don't want to record it for future runs.
++# Also quote any args containing shell meta-characters.
++# Make two passes to allow for proper duplicate-argument suppression.
++ac_configure_args=
++ac_configure_args0=
++ac_configure_args1=
++ac_must_keep_next=false
++for ac_pass in 1 2
++do
++ for ac_arg
++ do
++ case $ac_arg in
++ -no-create | --no-c* | -n | -no-recursion | --no-r*) continue ;;
++ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
++ | -silent | --silent | --silen | --sile | --sil)
++ continue ;;
++ *\'*)
++ ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
++ esac
++ case $ac_pass in
++ 1) as_fn_append ac_configure_args0 " '$ac_arg'" ;;
++ 2)
++ as_fn_append ac_configure_args1 " '$ac_arg'"
++ if test $ac_must_keep_next = true; then
++ ac_must_keep_next=false # Got value, back to normal.
++ else
++ case $ac_arg in
++ *=* | --config-cache | -C | -disable-* | --disable-* \
++ | -enable-* | --enable-* | -gas | --g* | -nfp | --nf* \
++ | -q | -quiet | --q* | -silent | --sil* | -v | -verb* \
++ | -with-* | --with-* | -without-* | --without-* | --x)
++ case "$ac_configure_args0 " in
++ "$ac_configure_args1"*" '$ac_arg' "* ) continue ;;
++ esac
++ ;;
++ -* ) ac_must_keep_next=true ;;
++ esac
++ fi
++ as_fn_append ac_configure_args " '$ac_arg'"
++ ;;
++ esac
++ done
++done
++{ ac_configure_args0=; unset ac_configure_args0;}
++{ ac_configure_args1=; unset ac_configure_args1;}
++
++# When interrupted or exit'd, cleanup temporary files, and complete
++# config.log. We remove comments because anyway the quotes in there
++# would cause problems or look ugly.
++# WARNING: Use '\'' to represent an apostrophe within the trap.
++# WARNING: Do not start the trap code with a newline, due to a FreeBSD 4.0 bug.
++trap 'exit_status=$?
++ # Save into config.log some information that might help in debugging.
++ {
++ echo
++
++ $as_echo "## ---------------- ##
++## Cache variables. ##
++## ---------------- ##"
++ echo
++ # The following way of writing the cache mishandles newlines in values,
++(
++ for ac_var in `(set) 2>&1 | sed -n '\''s/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'\''`; do
++ eval ac_val=\$$ac_var
++ case $ac_val in #(
++ *${as_nl}*)
++ case $ac_var in #(
++ *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
++$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
++ esac
++ case $ac_var in #(
++ _ | IFS | as_nl) ;; #(
++ BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
++ *) { eval $ac_var=; unset $ac_var;} ;;
++ esac ;;
++ esac
++ done
++ (set) 2>&1 |
++ case $as_nl`(ac_space='\'' '\''; set) 2>&1` in #(
++ *${as_nl}ac_space=\ *)
++ sed -n \
++ "s/'\''/'\''\\\\'\'''\''/g;
++ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\''\\2'\''/p"
++ ;; #(
++ *)
++ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
++ ;;
++ esac |
++ sort
++)
++ echo
++
++ $as_echo "## ----------------- ##
++## Output variables. ##
++## ----------------- ##"
++ echo
++ for ac_var in $ac_subst_vars
++ do
++ eval ac_val=\$$ac_var
++ case $ac_val in
++ *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
++ esac
++ $as_echo "$ac_var='\''$ac_val'\''"
++ done | sort
++ echo
++
++ if test -n "$ac_subst_files"; then
++ $as_echo "## ------------------- ##
++## File substitutions. ##
++## ------------------- ##"
++ echo
++ for ac_var in $ac_subst_files
++ do
++ eval ac_val=\$$ac_var
++ case $ac_val in
++ *\'\''*) ac_val=`$as_echo "$ac_val" | sed "s/'\''/'\''\\\\\\\\'\'''\''/g"`;;
++ esac
++ $as_echo "$ac_var='\''$ac_val'\''"
++ done | sort
++ echo
++ fi
++
++ if test -s confdefs.h; then
++ $as_echo "## ----------- ##
++## confdefs.h. ##
++## ----------- ##"
++ echo
++ cat confdefs.h
++ echo
++ fi
++ test "$ac_signal" != 0 &&
++ $as_echo "$as_me: caught signal $ac_signal"
++ $as_echo "$as_me: exit $exit_status"
++ } >&5
++ rm -f core *.core core.conftest.* &&
++ rm -f -r conftest* confdefs* conf$$* $ac_clean_files &&
++ exit $exit_status
++' 0
++for ac_signal in 1 2 13 15; do
++ trap 'ac_signal='$ac_signal'; as_fn_exit 1' $ac_signal
++done
++ac_signal=0
++
++# confdefs.h avoids OS command line length limits that DEFS can exceed.
++rm -f -r conftest* confdefs.h
++
++$as_echo "/* confdefs.h */" > confdefs.h
++
++# Predefined preprocessor variables.
++
++cat >>confdefs.h <<_ACEOF
++#define PACKAGE_NAME "$PACKAGE_NAME"
++_ACEOF
++
++cat >>confdefs.h <<_ACEOF
++#define PACKAGE_TARNAME "$PACKAGE_TARNAME"
++_ACEOF
++
++cat >>confdefs.h <<_ACEOF
++#define PACKAGE_VERSION "$PACKAGE_VERSION"
++_ACEOF
++
++cat >>confdefs.h <<_ACEOF
++#define PACKAGE_STRING "$PACKAGE_STRING"
++_ACEOF
++
++cat >>confdefs.h <<_ACEOF
++#define PACKAGE_BUGREPORT "$PACKAGE_BUGREPORT"
++_ACEOF
++
++cat >>confdefs.h <<_ACEOF
++#define PACKAGE_URL "$PACKAGE_URL"
++_ACEOF
++
++
++# Let the site file select an alternate cache file if it wants to.
++# Prefer an explicitly selected file to automatically selected ones.
++ac_site_file1=NONE
++ac_site_file2=NONE
++if test -n "$CONFIG_SITE"; then
++ # We do not want a PATH search for config.site.
++ case $CONFIG_SITE in #((
++ -*) ac_site_file1=./$CONFIG_SITE;;
++ */*) ac_site_file1=$CONFIG_SITE;;
++ *) ac_site_file1=./$CONFIG_SITE;;
++ esac
++elif test "x$prefix" != xNONE; then
++ ac_site_file1=$prefix/share/config.site
++ ac_site_file2=$prefix/etc/config.site
++else
++ ac_site_file1=$ac_default_prefix/share/config.site
++ ac_site_file2=$ac_default_prefix/etc/config.site
++fi
++for ac_site_file in "$ac_site_file1" "$ac_site_file2"
++do
++ test "x$ac_site_file" = xNONE && continue
++ if test /dev/null != "$ac_site_file" && test -r "$ac_site_file"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: loading site script $ac_site_file" >&5
++$as_echo "$as_me: loading site script $ac_site_file" >&6;}
++ sed 's/^/| /' "$ac_site_file" >&5
++ . "$ac_site_file" \
++ || { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
++as_fn_error $? "failed to load site script $ac_site_file
++See \`config.log' for more details" "$LINENO" 5; }
++ fi
++done
++
++if test -r "$cache_file"; then
++ # Some versions of bash will fail to source /dev/null (special files
++ # actually), so we avoid doing that. DJGPP emulates it as a regular file.
++ if test /dev/null != "$cache_file" && test -f "$cache_file"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: loading cache $cache_file" >&5
++$as_echo "$as_me: loading cache $cache_file" >&6;}
++ case $cache_file in
++ [\\/]* | ?:[\\/]* ) . "$cache_file";;
++ *) . "./$cache_file";;
++ esac
++ fi
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: creating cache $cache_file" >&5
++$as_echo "$as_me: creating cache $cache_file" >&6;}
++ >$cache_file
++fi
++
++# Check that the precious variables saved in the cache have kept the same
++# value.
++ac_cache_corrupted=false
++for ac_var in $ac_precious_vars; do
++ eval ac_old_set=\$ac_cv_env_${ac_var}_set
++ eval ac_new_set=\$ac_env_${ac_var}_set
++ eval ac_old_val=\$ac_cv_env_${ac_var}_value
++ eval ac_new_val=\$ac_env_${ac_var}_value
++ case $ac_old_set,$ac_new_set in
++ set,)
++ { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&5
++$as_echo "$as_me: error: \`$ac_var' was set to \`$ac_old_val' in the previous run" >&2;}
++ ac_cache_corrupted=: ;;
++ ,set)
++ { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' was not set in the previous run" >&5
++$as_echo "$as_me: error: \`$ac_var' was not set in the previous run" >&2;}
++ ac_cache_corrupted=: ;;
++ ,);;
++ *)
++ if test "x$ac_old_val" != "x$ac_new_val"; then
++ # differences in whitespace do not lead to failure.
++ ac_old_val_w=`echo x $ac_old_val`
++ ac_new_val_w=`echo x $ac_new_val`
++ if test "$ac_old_val_w" != "$ac_new_val_w"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: error: \`$ac_var' has changed since the previous run:" >&5
++$as_echo "$as_me: error: \`$ac_var' has changed since the previous run:" >&2;}
++ ac_cache_corrupted=:
++ else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&5
++$as_echo "$as_me: warning: ignoring whitespace changes in \`$ac_var' since the previous run:" >&2;}
++ eval $ac_var=\$ac_old_val
++ fi
++ { $as_echo "$as_me:${as_lineno-$LINENO}: former value: \`$ac_old_val'" >&5
++$as_echo "$as_me: former value: \`$ac_old_val'" >&2;}
++ { $as_echo "$as_me:${as_lineno-$LINENO}: current value: \`$ac_new_val'" >&5
++$as_echo "$as_me: current value: \`$ac_new_val'" >&2;}
++ fi;;
++ esac
++ # Pass precious variables to config.status.
++ if test "$ac_new_set" = set; then
++ case $ac_new_val in
++ *\'*) ac_arg=$ac_var=`$as_echo "$ac_new_val" | sed "s/'/'\\\\\\\\''/g"` ;;
++ *) ac_arg=$ac_var=$ac_new_val ;;
++ esac
++ case " $ac_configure_args " in
++ *" '$ac_arg' "*) ;; # Avoid dups. Use of quotes ensures accuracy.
++ *) as_fn_append ac_configure_args " '$ac_arg'" ;;
++ esac
++ fi
++done
++if $ac_cache_corrupted; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
++ { $as_echo "$as_me:${as_lineno-$LINENO}: error: changes in the environment can compromise the build" >&5
++$as_echo "$as_me: error: changes in the environment can compromise the build" >&2;}
++ as_fn_error $? "run \`make distclean' and/or \`rm $cache_file' and start over" "$LINENO" 5
++fi
++## -------------------- ##
++## Main body of script. ##
++## -------------------- ##
++
++ac_ext=c
++ac_cpp='$CPP $CPPFLAGS'
++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_c_compiler_gnu
++
++
++
++ac_config_headers="$ac_config_headers config.h"
++
++
++
++
++ac_ext=c
++ac_cpp='$CPP $CPPFLAGS'
++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_c_compiler_gnu
++if test -n "$ac_tool_prefix"; then
++ # Extract the first word of "${ac_tool_prefix}gcc", so it can be a program name with args.
++set dummy ${ac_tool_prefix}gcc; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_prog_CC+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ if test -n "$CC"; then
++ ac_cv_prog_CC="$CC" # Let the user override the test.
++else
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ ac_cv_prog_CC="${ac_tool_prefix}gcc"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++fi
++fi
++CC=$ac_cv_prog_CC
++if test -n "$CC"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
++$as_echo "$CC" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++
++fi
++if test -z "$ac_cv_prog_CC"; then
++ ac_ct_CC=$CC
++ # Extract the first word of "gcc", so it can be a program name with args.
++set dummy gcc; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_prog_ac_ct_CC+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ if test -n "$ac_ct_CC"; then
++ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
++else
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ ac_cv_prog_ac_ct_CC="gcc"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++fi
++fi
++ac_ct_CC=$ac_cv_prog_ac_ct_CC
++if test -n "$ac_ct_CC"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
++$as_echo "$ac_ct_CC" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++ if test "x$ac_ct_CC" = x; then
++ CC=""
++ else
++ case $cross_compiling:$ac_tool_warned in
++yes:)
++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
++ac_tool_warned=yes ;;
++esac
++ CC=$ac_ct_CC
++ fi
++else
++ CC="$ac_cv_prog_CC"
++fi
++
++if test -z "$CC"; then
++ if test -n "$ac_tool_prefix"; then
++ # Extract the first word of "${ac_tool_prefix}cc", so it can be a program name with args.
++set dummy ${ac_tool_prefix}cc; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_prog_CC+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ if test -n "$CC"; then
++ ac_cv_prog_CC="$CC" # Let the user override the test.
++else
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ ac_cv_prog_CC="${ac_tool_prefix}cc"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++fi
++fi
++CC=$ac_cv_prog_CC
++if test -n "$CC"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
++$as_echo "$CC" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++
++ fi
++fi
++if test -z "$CC"; then
++ # Extract the first word of "cc", so it can be a program name with args.
++set dummy cc; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_prog_CC+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ if test -n "$CC"; then
++ ac_cv_prog_CC="$CC" # Let the user override the test.
++else
++ ac_prog_rejected=no
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ if test "$as_dir/$ac_word$ac_exec_ext" = "/usr/ucb/cc"; then
++ ac_prog_rejected=yes
++ continue
++ fi
++ ac_cv_prog_CC="cc"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++if test $ac_prog_rejected = yes; then
++ # We found a bogon in the path, so make sure we never use it.
++ set dummy $ac_cv_prog_CC
++ shift
++ if test $# != 0; then
++ # We chose a different compiler from the bogus one.
++ # However, it has the same basename, so the bogon will be chosen
++ # first if we set CC to just the basename; use the full file name.
++ shift
++ ac_cv_prog_CC="$as_dir/$ac_word${1+' '}$@"
++ fi
++fi
++fi
++fi
++CC=$ac_cv_prog_CC
++if test -n "$CC"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
++$as_echo "$CC" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++
++fi
++if test -z "$CC"; then
++ if test -n "$ac_tool_prefix"; then
++ for ac_prog in cl.exe
++ do
++ # Extract the first word of "$ac_tool_prefix$ac_prog", so it can be a program name with args.
++set dummy $ac_tool_prefix$ac_prog; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_prog_CC+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ if test -n "$CC"; then
++ ac_cv_prog_CC="$CC" # Let the user override the test.
++else
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ ac_cv_prog_CC="$ac_tool_prefix$ac_prog"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++fi
++fi
++CC=$ac_cv_prog_CC
++if test -n "$CC"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $CC" >&5
++$as_echo "$CC" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++
++ test -n "$CC" && break
++ done
++fi
++if test -z "$CC"; then
++ ac_ct_CC=$CC
++ for ac_prog in cl.exe
++do
++ # Extract the first word of "$ac_prog", so it can be a program name with args.
++set dummy $ac_prog; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_prog_ac_ct_CC+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ if test -n "$ac_ct_CC"; then
++ ac_cv_prog_ac_ct_CC="$ac_ct_CC" # Let the user override the test.
++else
++as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ ac_cv_prog_ac_ct_CC="$ac_prog"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++fi
++fi
++ac_ct_CC=$ac_cv_prog_ac_ct_CC
++if test -n "$ac_ct_CC"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_ct_CC" >&5
++$as_echo "$ac_ct_CC" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++
++ test -n "$ac_ct_CC" && break
++done
++
++ if test "x$ac_ct_CC" = x; then
++ CC=""
++ else
++ case $cross_compiling:$ac_tool_warned in
++yes:)
++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
++ac_tool_warned=yes ;;
++esac
++ CC=$ac_ct_CC
++ fi
++fi
++
++fi
++
++
++test -z "$CC" && { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
++as_fn_error $? "no acceptable C compiler found in \$PATH
++See \`config.log' for more details" "$LINENO" 5; }
++
++# Provide some information about the compiler.
++$as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler version" >&5
++set X $ac_compile
++ac_compiler=$2
++for ac_option in --version -v -V -qversion; do
++ { { ac_try="$ac_compiler $ac_option >&5"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_compiler $ac_option >&5") 2>conftest.err
++ ac_status=$?
++ if test -s conftest.err; then
++ sed '10a\
++... rest of stderr output deleted ...
++ 10q' conftest.err >conftest.er1
++ cat conftest.er1 >&5
++ fi
++ rm -f conftest.er1 conftest.err
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }
++done
++
++cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++ac_clean_files_save=$ac_clean_files
++ac_clean_files="$ac_clean_files a.out a.out.dSYM a.exe b.out"
++# Try to create an executable without -o first, disregard a.out.
++# It will help us diagnose broken compilers, and finding out an intuition
++# of exeext.
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether the C compiler works" >&5
++$as_echo_n "checking whether the C compiler works... " >&6; }
++ac_link_default=`$as_echo "$ac_link" | sed 's/ -o *conftest[^ ]*//'`
++
++# The possible output files:
++ac_files="a.out conftest.exe conftest a.exe a_out.exe b.out conftest.*"
++
++ac_rmfiles=
++for ac_file in $ac_files
++do
++ case $ac_file in
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
++ * ) ac_rmfiles="$ac_rmfiles $ac_file";;
++ esac
++done
++rm -f $ac_rmfiles
++
++if { { ac_try="$ac_link_default"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_link_default") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; then :
++ # Autoconf-2.13 could set the ac_cv_exeext variable to `no'.
++# So ignore a value of `no', otherwise this would lead to `EXEEXT = no'
++# in a Makefile. We should not override ac_cv_exeext if it was cached,
++# so that the user can short-circuit this test for compilers unknown to
++# Autoconf.
++for ac_file in $ac_files ''
++do
++ test -f "$ac_file" || continue
++ case $ac_file in
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj )
++ ;;
++ [ab].out )
++ # We found the default executable, but exeext='' is most
++ # certainly right.
++ break;;
++ *.* )
++ if test "${ac_cv_exeext+set}" = set && test "$ac_cv_exeext" != no;
++ then :; else
++ ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
++ fi
++ # We set ac_cv_exeext here because the later test for it is not
++ # safe: cross compilers may not add the suffix if given an `-o'
++ # argument, so we may need to know it at that point already.
++ # Even if this section looks crufty: it has the advantage of
++ # actually working.
++ break;;
++ * )
++ break;;
++ esac
++done
++test "$ac_cv_exeext" = no && ac_cv_exeext=
++
++else
++ ac_file=''
++fi
++if test -z "$ac_file"; then :
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++$as_echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
++as_fn_error 77 "C compiler cannot create executables
++See \`config.log' for more details" "$LINENO" 5; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
++$as_echo "yes" >&6; }
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for C compiler default output file name" >&5
++$as_echo_n "checking for C compiler default output file name... " >&6; }
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_file" >&5
++$as_echo "$ac_file" >&6; }
++ac_exeext=$ac_cv_exeext
++
++rm -f -r a.out a.out.dSYM a.exe conftest$ac_cv_exeext b.out
++ac_clean_files=$ac_clean_files_save
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of executables" >&5
++$as_echo_n "checking for suffix of executables... " >&6; }
++if { { ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_link") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; then :
++ # If both `conftest.exe' and `conftest' are `present' (well, observable)
++# catch `conftest.exe'. For instance with Cygwin, `ls conftest' will
++# work properly (i.e., refer to `conftest.exe'), while it won't with
++# `rm'.
++for ac_file in conftest.exe conftest conftest.*; do
++ test -f "$ac_file" || continue
++ case $ac_file in
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM | *.o | *.obj ) ;;
++ *.* ) ac_cv_exeext=`expr "$ac_file" : '[^.]*\(\..*\)'`
++ break;;
++ * ) break;;
++ esac
++done
++else
++ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
++as_fn_error $? "cannot compute suffix of executables: cannot compile and link
++See \`config.log' for more details" "$LINENO" 5; }
++fi
++rm -f conftest conftest$ac_cv_exeext
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_exeext" >&5
++$as_echo "$ac_cv_exeext" >&6; }
++
++rm -f conftest.$ac_ext
++EXEEXT=$ac_cv_exeext
++ac_exeext=$EXEEXT
++cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++#include <stdio.h>
++int
++main ()
++{
++FILE *f = fopen ("conftest.out", "w");
++ return ferror (f) || fclose (f) != 0;
++
++ ;
++ return 0;
++}
++_ACEOF
++ac_clean_files="$ac_clean_files conftest.out"
++# Check that the compiler produces executables we can run. If not, either
++# the compiler is broken, or we cross compile.
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are cross compiling" >&5
++$as_echo_n "checking whether we are cross compiling... " >&6; }
++if test "$cross_compiling" != yes; then
++ { { ac_try="$ac_link"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_link") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }
++ if { ac_try='./conftest$ac_cv_exeext'
++ { { case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_try") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; }; then
++ cross_compiling=no
++ else
++ if test "$cross_compiling" = maybe; then
++ cross_compiling=yes
++ else
++ { { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
++as_fn_error $? "cannot run C compiled programs.
++If you meant to cross compile, use \`--host'.
++See \`config.log' for more details" "$LINENO" 5; }
++ fi
++ fi
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $cross_compiling" >&5
++$as_echo "$cross_compiling" >&6; }
++
++rm -f conftest.$ac_ext conftest$ac_cv_exeext conftest.out
++ac_clean_files=$ac_clean_files_save
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for suffix of object files" >&5
++$as_echo_n "checking for suffix of object files... " >&6; }
++if ${ac_cv_objext+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++rm -f conftest.o conftest.obj
++if { { ac_try="$ac_compile"
++case "(($ac_try" in
++ *\"* | *\`* | *\\*) ac_try_echo=\$ac_try;;
++ *) ac_try_echo=$ac_try;;
++esac
++eval ac_try_echo="\"\$as_me:${as_lineno-$LINENO}: $ac_try_echo\""
++$as_echo "$ac_try_echo"; } >&5
++ (eval "$ac_compile") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; then :
++ for ac_file in conftest.o conftest.obj conftest.*; do
++ test -f "$ac_file" || continue;
++ case $ac_file in
++ *.$ac_ext | *.xcoff | *.tds | *.d | *.pdb | *.xSYM | *.bb | *.bbg | *.map | *.inf | *.dSYM ) ;;
++ *) ac_cv_objext=`expr "$ac_file" : '.*\.\(.*\)'`
++ break;;
++ esac
++done
++else
++ $as_echo "$as_me: failed program was:" >&5
++sed 's/^/| /' conftest.$ac_ext >&5
++
++{ { $as_echo "$as_me:${as_lineno-$LINENO}: error: in \`$ac_pwd':" >&5
++$as_echo "$as_me: error: in \`$ac_pwd':" >&2;}
++as_fn_error $? "cannot compute suffix of object files: cannot compile
++See \`config.log' for more details" "$LINENO" 5; }
++fi
++rm -f conftest.$ac_cv_objext conftest.$ac_ext
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_objext" >&5
++$as_echo "$ac_cv_objext" >&6; }
++OBJEXT=$ac_cv_objext
++ac_objext=$OBJEXT
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether we are using the GNU C compiler" >&5
++$as_echo_n "checking whether we are using the GNU C compiler... " >&6; }
++if ${ac_cv_c_compiler_gnu+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++int
++main ()
++{
++#ifndef __GNUC__
++ choke me
++#endif
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ ac_compiler_gnu=yes
++else
++ ac_compiler_gnu=no
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ac_cv_c_compiler_gnu=$ac_compiler_gnu
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_c_compiler_gnu" >&5
++$as_echo "$ac_cv_c_compiler_gnu" >&6; }
++if test $ac_compiler_gnu = yes; then
++ GCC=yes
++else
++ GCC=
++fi
++ac_test_CFLAGS=${CFLAGS+set}
++ac_save_CFLAGS=$CFLAGS
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking whether $CC accepts -g" >&5
++$as_echo_n "checking whether $CC accepts -g... " >&6; }
++if ${ac_cv_prog_cc_g+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ ac_save_c_werror_flag=$ac_c_werror_flag
++ ac_c_werror_flag=yes
++ ac_cv_prog_cc_g=no
++ CFLAGS="-g"
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_prog_cc_g=yes
++else
++ CFLAGS=""
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++
++else
++ ac_c_werror_flag=$ac_save_c_werror_flag
++ CFLAGS="-g"
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_prog_cc_g=yes
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ ac_c_werror_flag=$ac_save_c_werror_flag
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_g" >&5
++$as_echo "$ac_cv_prog_cc_g" >&6; }
++if test "$ac_test_CFLAGS" = set; then
++ CFLAGS=$ac_save_CFLAGS
++elif test $ac_cv_prog_cc_g = yes; then
++ if test "$GCC" = yes; then
++ CFLAGS="-g -O2"
++ else
++ CFLAGS="-g"
++ fi
++else
++ if test "$GCC" = yes; then
++ CFLAGS="-O2"
++ else
++ CFLAGS=
++ fi
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $CC option to accept ISO C89" >&5
++$as_echo_n "checking for $CC option to accept ISO C89... " >&6; }
++if ${ac_cv_prog_cc_c89+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ ac_cv_prog_cc_c89=no
++ac_save_CC=$CC
++cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++#include <stdarg.h>
++#include <stdio.h>
++struct stat;
++/* Most of the following tests are stolen from RCS 5.7's src/conf.sh. */
++struct buf { int x; };
++FILE * (*rcsopen) (struct buf *, struct stat *, int);
++static char *e (p, i)
++ char **p;
++ int i;
++{
++ return p[i];
++}
++static char *f (char * (*g) (char **, int), char **p, ...)
++{
++ char *s;
++ va_list v;
++ va_start (v,p);
++ s = g (p, va_arg (v,int));
++ va_end (v);
++ return s;
++}
++
++/* OSF 4.0 Compaq cc is some sort of almost-ANSI by default. It has
++ function prototypes and stuff, but not '\xHH' hex character constants.
++ These don't provoke an error unfortunately, instead are silently treated
++ as 'x'. The following induces an error, until -std is added to get
++ proper ANSI mode. Curiously '\x00'!='x' always comes out true, for an
++ array size at least. It's necessary to write '\x00'==0 to get something
++ that's true only with -std. */
++int osf4_cc_array ['\x00' == 0 ? 1 : -1];
++
++/* IBM C 6 for AIX is almost-ANSI by default, but it replaces macro parameters
++ inside strings and character constants. */
++#define FOO(x) 'x'
++int xlc6_cc_array[FOO(a) == 'x' ? 1 : -1];
++
++int test (int i, double x);
++struct s1 {int (*f) (int a);};
++struct s2 {int (*f) (double a);};
++int pairnames (int, char **, FILE *(*)(struct buf *, struct stat *, int), int, int);
++int argc;
++char **argv;
++int
++main ()
++{
++return f (e, argv, 0) != argv[0] || f (e, argv, 1) != argv[1];
++ ;
++ return 0;
++}
++_ACEOF
++for ac_arg in '' -qlanglvl=extc89 -qlanglvl=ansi -std \
++ -Ae "-Aa -D_HPUX_SOURCE" "-Xc -D__EXTENSIONS__"
++do
++ CC="$ac_save_CC $ac_arg"
++ if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_prog_cc_c89=$ac_arg
++fi
++rm -f core conftest.err conftest.$ac_objext
++ test "x$ac_cv_prog_cc_c89" != "xno" && break
++done
++rm -f conftest.$ac_ext
++CC=$ac_save_CC
++
++fi
++# AC_CACHE_VAL
++case "x$ac_cv_prog_cc_c89" in
++ x)
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none needed" >&5
++$as_echo "none needed" >&6; } ;;
++ xno)
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: unsupported" >&5
++$as_echo "unsupported" >&6; } ;;
++ *)
++ CC="$CC $ac_cv_prog_cc_c89"
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_prog_cc_c89" >&5
++$as_echo "$ac_cv_prog_cc_c89" >&6; } ;;
++esac
++if test "x$ac_cv_prog_cc_c89" != xno; then :
++
++fi
++
++ac_ext=c
++ac_cpp='$CPP $CPPFLAGS'
++ac_compile='$CC -c $CFLAGS $CPPFLAGS conftest.$ac_ext >&5'
++ac_link='$CC -o conftest$ac_exeext $CFLAGS $CPPFLAGS $LDFLAGS conftest.$ac_ext $LIBS >&5'
++ac_compiler_gnu=$ac_cv_c_compiler_gnu
++
++
++
++# Check whether --enable-largefile was given.
++if test "${enable_largefile+set}" = set; then :
++ enableval=$enable_largefile;
++fi
++
++if test "$enable_largefile" != no; then
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for special C compiler options needed for large files" >&5
++$as_echo_n "checking for special C compiler options needed for large files... " >&6; }
++if ${ac_cv_sys_largefile_CC+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ ac_cv_sys_largefile_CC=no
++ if test "$GCC" != yes; then
++ ac_save_CC=$CC
++ while :; do
++ # IRIX 6.2 and later do not support large files by default,
++ # so use the C compiler's -n32 option if that helps.
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++#include <sys/types.h>
++ /* Check that off_t can represent 2**63 - 1 correctly.
++ We can't simply define LARGE_OFF_T to be 9223372036854775807,
++ since some C++ compilers masquerading as C compilers
++ incorrectly reject 9223372036854775807. */
++#define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31))
++ int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
++ && LARGE_OFF_T % 2147483647 == 1)
++ ? 1 : -1];
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++ if ac_fn_c_try_compile "$LINENO"; then :
++ break
++fi
++rm -f core conftest.err conftest.$ac_objext
++ CC="$CC -n32"
++ if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_sys_largefile_CC=' -n32'; break
++fi
++rm -f core conftest.err conftest.$ac_objext
++ break
++ done
++ CC=$ac_save_CC
++ rm -f conftest.$ac_ext
++ fi
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_sys_largefile_CC" >&5
++$as_echo "$ac_cv_sys_largefile_CC" >&6; }
++ if test "$ac_cv_sys_largefile_CC" != no; then
++ CC=$CC$ac_cv_sys_largefile_CC
++ fi
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _FILE_OFFSET_BITS value needed for large files" >&5
++$as_echo_n "checking for _FILE_OFFSET_BITS value needed for large files... " >&6; }
++if ${ac_cv_sys_file_offset_bits+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ while :; do
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++#include <sys/types.h>
++ /* Check that off_t can represent 2**63 - 1 correctly.
++ We can't simply define LARGE_OFF_T to be 9223372036854775807,
++ since some C++ compilers masquerading as C compilers
++ incorrectly reject 9223372036854775807. */
++#define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31))
++ int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
++ && LARGE_OFF_T % 2147483647 == 1)
++ ? 1 : -1];
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_sys_file_offset_bits=no; break
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++#define _FILE_OFFSET_BITS 64
++#include <sys/types.h>
++ /* Check that off_t can represent 2**63 - 1 correctly.
++ We can't simply define LARGE_OFF_T to be 9223372036854775807,
++ since some C++ compilers masquerading as C compilers
++ incorrectly reject 9223372036854775807. */
++#define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31))
++ int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
++ && LARGE_OFF_T % 2147483647 == 1)
++ ? 1 : -1];
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_sys_file_offset_bits=64; break
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ ac_cv_sys_file_offset_bits=unknown
++ break
++done
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_sys_file_offset_bits" >&5
++$as_echo "$ac_cv_sys_file_offset_bits" >&6; }
++case $ac_cv_sys_file_offset_bits in #(
++ no | unknown) ;;
++ *)
++cat >>confdefs.h <<_ACEOF
++#define _FILE_OFFSET_BITS $ac_cv_sys_file_offset_bits
++_ACEOF
++;;
++esac
++rm -rf conftest*
++ if test $ac_cv_sys_file_offset_bits = unknown; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for _LARGE_FILES value needed for large files" >&5
++$as_echo_n "checking for _LARGE_FILES value needed for large files... " >&6; }
++if ${ac_cv_sys_large_files+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ while :; do
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++#include <sys/types.h>
++ /* Check that off_t can represent 2**63 - 1 correctly.
++ We can't simply define LARGE_OFF_T to be 9223372036854775807,
++ since some C++ compilers masquerading as C compilers
++ incorrectly reject 9223372036854775807. */
++#define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31))
++ int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
++ && LARGE_OFF_T % 2147483647 == 1)
++ ? 1 : -1];
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_sys_large_files=no; break
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++#define _LARGE_FILES 1
++#include <sys/types.h>
++ /* Check that off_t can represent 2**63 - 1 correctly.
++ We can't simply define LARGE_OFF_T to be 9223372036854775807,
++ since some C++ compilers masquerading as C compilers
++ incorrectly reject 9223372036854775807. */
++#define LARGE_OFF_T ((((off_t) 1 << 31) << 31) - 1 + (((off_t) 1 << 31) << 31))
++ int off_t_is_large[(LARGE_OFF_T % 2147483629 == 721
++ && LARGE_OFF_T % 2147483647 == 1)
++ ? 1 : -1];
++int
++main ()
++{
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_compile "$LINENO"; then :
++ ac_cv_sys_large_files=1; break
++fi
++rm -f core conftest.err conftest.$ac_objext conftest.$ac_ext
++ ac_cv_sys_large_files=unknown
++ break
++done
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_sys_large_files" >&5
++$as_echo "$ac_cv_sys_large_files" >&6; }
++case $ac_cv_sys_large_files in #(
++ no | unknown) ;;
++ *)
++cat >>confdefs.h <<_ACEOF
++#define _LARGE_FILES $ac_cv_sys_large_files
++_ACEOF
++;;
++esac
++rm -rf conftest*
++ fi
++
++
++fi
++
++
++ac_aux_dir=
++for ac_dir in "$srcdir" "$srcdir/.." "$srcdir/../.."; do
++ if test -f "$ac_dir/install-sh"; then
++ ac_aux_dir=$ac_dir
++ ac_install_sh="$ac_aux_dir/install-sh -c"
++ break
++ elif test -f "$ac_dir/install.sh"; then
++ ac_aux_dir=$ac_dir
++ ac_install_sh="$ac_aux_dir/install.sh -c"
++ break
++ elif test -f "$ac_dir/shtool"; then
++ ac_aux_dir=$ac_dir
++ ac_install_sh="$ac_aux_dir/shtool install -c"
++ break
++ fi
++done
++if test -z "$ac_aux_dir"; then
++ as_fn_error $? "cannot find install-sh, install.sh, or shtool in \"$srcdir\" \"$srcdir/..\" \"$srcdir/../..\"" "$LINENO" 5
++fi
++
++# These three variables are undocumented and unsupported,
++# and are intended to be withdrawn in a future Autoconf release.
++# They can cause serious problems if a builder's source tree is in a directory
++# whose full name contains unusual characters.
++ac_config_guess="$SHELL $ac_aux_dir/config.guess" # Please don't use this var.
++ac_config_sub="$SHELL $ac_aux_dir/config.sub" # Please don't use this var.
++ac_configure="$SHELL $ac_aux_dir/configure" # Please don't use this var.
++
++
++
++
++
++# Check whether --with-htslib was given.
++if test "${with_htslib+set}" = set; then :
++ withval=$with_htslib;
++else
++ with_htslib=search
++fi
++
++
++case $with_htslib in
++yes|search)
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking location of HTSlib source tree" >&5
++$as_echo_n "checking location of HTSlib source tree... " >&6; }
++ case $srcdir in
++ .) srcp= ;;
++ *) srcp=$srcdir/ ;;
++ esac
++ found=
++ for dir in ${srcp}htslib* -- ${srcp}../htslib -- ${srcp}../htslib*
++ do
++ if test "$dir" = "--"; then
++ test -n "$found" && break
++ elif test -f "$dir/hts.c" && test -f "$dir/htslib/hts.h"; then
++ found="${found}1"
++ HTSDIR=$dir
++ fi
++ done
++ if test -z "$found"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: none found" >&5
++$as_echo "none found" >&6; }
++ ax_cv_htslib_which=system
++ elif test "$found" = 1; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $HTSDIR" >&5
++$as_echo "$HTSDIR" >&6; }
++ ax_cv_htslib_which=source
++ else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: several directories found" >&5
++$as_echo "several directories found" >&6; }
++ as_fn_error $? "use --with-htslib=DIR to select which HTSlib to use" "$LINENO" 5
++ fi
++ ;;
++no) ax_cv_htslib_which=none ;;
++system) ax_cv_htslib_which=system ;;
++*)
++ HTSDIR=$with_htslib
++ if test -f "$HTSDIR/hts.c" && test -f "$HTSDIR/htslib/hts.h"; then
++ ax_cv_htslib_which=source
++ else
++ ax_cv_htslib_which=install
++ fi
++ ;;
++esac
++
++case $ax_cv_htslib_which in
++source)
++ ax_cv_htslib=yes
++ HTSLIB_CPPFLAGS="-I$HTSDIR"
++ HTSLIB_LDFLAGS="-L$HTSDIR"
++ # We can't use a literal, because $HTSDIR is user-provided and variable
++ subdirs="$subdirs $HTSDIR"
++
++ ;;
++system)
++ ac_fn_c_check_header_compile "$LINENO" "htslib/sam.h" "ac_cv_header_htslib_sam_h" ";
++"
++if test "x$ac_cv_header_htslib_sam_h" = xyes; then :
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for hts_version in -lhts" >&5
++$as_echo_n "checking for hts_version in -lhts... " >&6; }
++if ${ac_cv_lib_hts_hts_version+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ ac_check_lib_save_LIBS=$LIBS
++LIBS="-lhts $LIBS"
++cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char hts_version ();
++int
++main ()
++{
++return hts_version ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ac_cv_lib_hts_hts_version=yes
++else
++ ac_cv_lib_hts_hts_version=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++LIBS=$ac_check_lib_save_LIBS
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_hts_hts_version" >&5
++$as_echo "$ac_cv_lib_hts_hts_version" >&6; }
++if test "x$ac_cv_lib_hts_hts_version" = xyes; then :
++ ax_cv_htslib=yes
++else
++ ax_cv_htslib=no
++fi
++
++else
++ ax_cv_htslib=no
++fi
++
++
++ ax_cv_htslib_which=install
++ HTSDIR=
++ HTSLIB_CPPFLAGS=
++ HTSLIB_LDFLAGS=
++ ;;
++install)
++ ax_saved_CPPFLAGS=$CPPFLAGS
++ ax_saved_LDFLAGS=$LDFLAGS
++ HTSLIB_CPPFLAGS="-I$HTSDIR/include"
++ HTSLIB_LDFLAGS="-L$HTSDIR/lib"
++ CPPFLAGS="$CPPFLAGS $HTSLIB_CPPFLAGS"
++ LDFLAGS="$LDFLAGS $HTSLIB_LDFLAGS"
++ ac_fn_c_check_header_compile "$LINENO" "htslib/sam.h" "ac_cv_header_htslib_sam_h" ";
++"
++if test "x$ac_cv_header_htslib_sam_h" = xyes; then :
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for hts_version in -lhts" >&5
++$as_echo_n "checking for hts_version in -lhts... " >&6; }
++if ${ac_cv_lib_hts_hts_version+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ ac_check_lib_save_LIBS=$LIBS
++LIBS="-lhts $LIBS"
++cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char hts_version ();
++int
++main ()
++{
++return hts_version ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ac_cv_lib_hts_hts_version=yes
++else
++ ac_cv_lib_hts_hts_version=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++LIBS=$ac_check_lib_save_LIBS
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_hts_hts_version" >&5
++$as_echo "$ac_cv_lib_hts_hts_version" >&6; }
++if test "x$ac_cv_lib_hts_hts_version" = xyes; then :
++ ax_cv_htslib=yes
++else
++ ax_cv_htslib=no
++fi
++
++else
++ ax_cv_htslib=no
++fi
++
++
++ HTSDIR=
++ CPPFLAGS=$ax_saved_CPPFLAGS
++ LDFLAGS=$ax_saved_LDFLAGS
++ ;;
++none)
++ ax_cv_htslib=no
++ ;;
++esac
++
++
++
++
++if test "$ax_cv_htslib" != yes; then
++ as_fn_error $? "HTSlib development files not found
++
++Samtools uses HTSlib to parse bioinformatics file formats etc. Building it
++requires an unpacked HTSlib source tree (which will be built in conjunction
++with samtools) or a previously-installed HTSlib. In either case you may
++need to configure --with-htslib=DIR to locate the appropriate HTSlib.
++
++FAILED. You must supply an HTSlib in order to build samtools successfully." "$LINENO" 5
++fi
++
++if test "$ax_cv_htslib_which" = source; then
++ Hsource=
++ Hinstall='#'
++else
++ Hsource='#'
++ Hinstall=
++fi
++
++
++
++
++# Check whether --with-curses was given.
++if test "${with_curses+set}" = set; then :
++ withval=$with_curses;
++fi
++
++
++if test "$with_curses" != no; then
++
++
++
++
++
++
++
++if test "x$ac_cv_env_PKG_CONFIG_set" != "xset"; then
++ if test -n "$ac_tool_prefix"; then
++ # Extract the first word of "${ac_tool_prefix}pkg-config", so it can be a program name with args.
++set dummy ${ac_tool_prefix}pkg-config; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_path_PKG_CONFIG+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ case $PKG_CONFIG in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_PKG_CONFIG="$PKG_CONFIG" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ ac_cv_path_PKG_CONFIG="$as_dir/$ac_word$ac_exec_ext"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++ ;;
++esac
++fi
++PKG_CONFIG=$ac_cv_path_PKG_CONFIG
++if test -n "$PKG_CONFIG"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $PKG_CONFIG" >&5
++$as_echo "$PKG_CONFIG" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++
++fi
++if test -z "$ac_cv_path_PKG_CONFIG"; then
++ ac_pt_PKG_CONFIG=$PKG_CONFIG
++ # Extract the first word of "pkg-config", so it can be a program name with args.
++set dummy pkg-config; ac_word=$2
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for $ac_word" >&5
++$as_echo_n "checking for $ac_word... " >&6; }
++if ${ac_cv_path_ac_pt_PKG_CONFIG+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ case $ac_pt_PKG_CONFIG in
++ [\\/]* | ?:[\\/]*)
++ ac_cv_path_ac_pt_PKG_CONFIG="$ac_pt_PKG_CONFIG" # Let the user override the test with a path.
++ ;;
++ *)
++ as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ for ac_exec_ext in '' $ac_executable_extensions; do
++ if as_fn_executable_p "$as_dir/$ac_word$ac_exec_ext"; then
++ ac_cv_path_ac_pt_PKG_CONFIG="$as_dir/$ac_word$ac_exec_ext"
++ $as_echo "$as_me:${as_lineno-$LINENO}: found $as_dir/$ac_word$ac_exec_ext" >&5
++ break 2
++ fi
++done
++ done
++IFS=$as_save_IFS
++
++ ;;
++esac
++fi
++ac_pt_PKG_CONFIG=$ac_cv_path_ac_pt_PKG_CONFIG
++if test -n "$ac_pt_PKG_CONFIG"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_pt_PKG_CONFIG" >&5
++$as_echo "$ac_pt_PKG_CONFIG" >&6; }
++else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++fi
++
++ if test "x$ac_pt_PKG_CONFIG" = x; then
++ PKG_CONFIG=""
++ else
++ case $cross_compiling:$ac_tool_warned in
++yes:)
++{ $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: using cross tools not prefixed with host triplet" >&5
++$as_echo "$as_me: WARNING: using cross tools not prefixed with host triplet" >&2;}
++ac_tool_warned=yes ;;
++esac
++ PKG_CONFIG=$ac_pt_PKG_CONFIG
++ fi
++else
++ PKG_CONFIG="$ac_cv_path_PKG_CONFIG"
++fi
++
++fi
++if test -n "$PKG_CONFIG"; then
++ _pkg_min_version=0.9.0
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking pkg-config is at least version $_pkg_min_version" >&5
++$as_echo_n "checking pkg-config is at least version $_pkg_min_version... " >&6; }
++ if $PKG_CONFIG --atleast-pkgconfig-version $_pkg_min_version; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
++$as_echo "yes" >&6; }
++ else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++ PKG_CONFIG=""
++ fi
++fi
++
++
++
++
++# Check whether --with-ncurses was given.
++if test "${with_ncurses+set}" = set; then :
++ withval=$with_ncurses;
++else
++ with_ncurses=check
++fi
++
++
++# Check whether --with-ncursesw was given.
++if test "${with_ncursesw+set}" = set; then :
++ withval=$with_ncursesw;
++else
++ with_ncursesw=check
++fi
++
++
++
++ ax_saved_LIBS=$LIBS
++ ax_saved_CPPFLAGS=$CPPFLAGS
++
++ if test "x$with_ncurses" = xyes || test "x$with_ncursesw" = xyes; then :
++ ax_with_plaincurses=no
++else
++ ax_with_plaincurses=check
++fi
++
++ ax_cv_curses_which=no
++
++ # Test for NcursesW
++ if test "x$CURSES_LIB" = x && test "x$with_ncursesw" != xno; then :
++
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for ncursesw via pkg-config" >&5
++$as_echo_n "checking for ncursesw via pkg-config... " >&6; }
++
++ if test -n "$_ax_cv_ncursesw_lib"; then
++ pkg_cv__ax_cv_ncursesw_lib="$_ax_cv_ncursesw_lib"
++ elif test -n "$PKG_CONFIG"; then
++ if test -n "$PKG_CONFIG" && \
++ { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"ncursesw\""; } >&5
++ ($PKG_CONFIG --exists --print-errors "ncursesw") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; then
++ pkg_cv__ax_cv_ncursesw_lib=`$PKG_CONFIG --libs "ncursesw" 2>/dev/null`
++ test "x$?" != "x0" && pkg_failed=yes
++else
++ pkg_failed=yes
++fi
++ else
++ pkg_failed=untried
++fi
++ if test -n "$_ax_cv_ncursesw_cppflags"; then
++ pkg_cv__ax_cv_ncursesw_cppflags="$_ax_cv_ncursesw_cppflags"
++ elif test -n "$PKG_CONFIG"; then
++ if test -n "$PKG_CONFIG" && \
++ { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"ncursesw\""; } >&5
++ ($PKG_CONFIG --exists --print-errors "ncursesw") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; then
++ pkg_cv__ax_cv_ncursesw_cppflags=`$PKG_CONFIG --cflags "ncursesw" 2>/dev/null`
++ test "x$?" != "x0" && pkg_failed=yes
++else
++ pkg_failed=yes
++fi
++ else
++ pkg_failed=untried
++fi
++
++ if test "x$pkg_failed" = "xyes" || test "x$pkg_failed" = "xuntried"; then :
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++ # No suitable .pc file found, have to find flags via fallback
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for ncursesw via fallback" >&5
++$as_echo_n "checking for ncursesw via fallback... " >&6; }
++if ${ax_cv_ncursesw+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ $as_echo
++ pkg_cv__ax_cv_ncursesw_lib="-lncursesw"
++ pkg_cv__ax_cv_ncursesw_cppflags="$CURSES_CPPFLAGS"
++ LIBS="$ax_saved_LIBS $pkg_cv__ax_cv_ncursesw_lib"
++ CPPFLAGS="$ax_saved_CPPFLAGS $pkg_cv__ax_cv_ncursesw_cppflags"
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for initscr() with $pkg_cv__ax_cv_ncursesw_lib" >&5
++$as_echo_n "checking for initscr() with $pkg_cv__ax_cv_ncursesw_lib... " >&6; }
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char initscr ();
++int
++main ()
++{
++return initscr ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
++$as_echo "yes" >&6; }
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for nodelay() with $pkg_cv__ax_cv_ncursesw_lib" >&5
++$as_echo_n "checking for nodelay() with $pkg_cv__ax_cv_ncursesw_lib... " >&6; }
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char nodelay ();
++int
++main ()
++{
++return nodelay ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++
++ ax_cv_ncursesw=yes
++
++else
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++ pkg_cv__ax_cv_ncursesw_lib="$pkg_cv__ax_cv_ncursesw_lib -ltinfow"
++ LIBS="$ax_saved_LIBS $pkg_cv__ax_cv_ncursesw_lib"
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for nodelay() with $pkg_cv__ax_cv_ncursesw_lib" >&5
++$as_echo_n "checking for nodelay() with $pkg_cv__ax_cv_ncursesw_lib... " >&6; }
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char nodelay ();
++int
++main ()
++{
++return nodelay ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++
++ ax_cv_ncursesw=yes
++
++else
++
++ ax_cv_ncursesw=no
++
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++else
++
++ ax_cv_ncursesw=no
++
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_ncursesw" >&5
++$as_echo "$ax_cv_ncursesw" >&6; }
++
++else
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
++$as_echo "yes" >&6; }
++ # Found .pc file, using its information
++ LIBS="$ax_saved_LIBS $pkg_cv__ax_cv_ncursesw_lib"
++ CPPFLAGS="$ax_saved_CPPFLAGS $pkg_cv__ax_cv_ncursesw_cppflags"
++ ax_cv_ncursesw=yes
++
++fi
++
++
++ if test "x$ax_cv_ncursesw" = xno && test "x$with_ncursesw" = xyes; then :
++
++ as_fn_error $? "--with-ncursesw specified but could not find NcursesW library" "$LINENO" 5
++
++fi
++
++ if test "x$ax_cv_ncursesw" = xyes; then :
++
++ ax_cv_curses=yes
++ ax_cv_curses_which=ncursesw
++ CURSES_LIB="$pkg_cv__ax_cv_ncursesw_lib"
++ CURSES_CPPFLAGS="$pkg_cv__ax_cv_ncursesw_cppflags"
++
++$as_echo "#define HAVE_NCURSESW 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES 1" >>confdefs.h
++
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working ncursesw/curses.h" >&5
++$as_echo_n "checking for working ncursesw/curses.h... " >&6; }
++if ${ax_cv_header_ncursesw_curses_h+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #define _XOPEN_SOURCE_EXTENDED 1
++ #include <ncursesw/curses.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ chtype c = COLOR_PAIR(1) & A_COLOR;
++ attr_t d = WA_NORMAL;
++ cchar_t e;
++ wint_t f;
++ int g = getattrs(stdscr);
++ int h = getcurx(stdscr) + getmaxx(stdscr);
++ initscr();
++ init_pair(1, COLOR_WHITE, COLOR_RED);
++ wattr_set(stdscr, d, 0, NULL);
++ wget_wch(stdscr, &f);
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_header_ncursesw_curses_h=yes
++else
++ ax_cv_header_ncursesw_curses_h=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_header_ncursesw_curses_h" >&5
++$as_echo "$ax_cv_header_ncursesw_curses_h" >&6; }
++ if test "x$ax_cv_header_ncursesw_curses_h" = xyes; then :
++
++ ax_cv_curses_enhanced=yes
++ ax_cv_curses_color=yes
++ ax_cv_curses_obsolete=yes
++
++$as_echo "#define HAVE_CURSES_ENHANCED 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_COLOR 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_OBSOLETE 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_NCURSESW_CURSES_H 1" >>confdefs.h
++
++
++fi
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working ncursesw.h" >&5
++$as_echo_n "checking for working ncursesw.h... " >&6; }
++if ${ax_cv_header_ncursesw_h+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #define _XOPEN_SOURCE_EXTENDED 1
++ #include <ncursesw.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ chtype c = COLOR_PAIR(1) & A_COLOR;
++ attr_t d = WA_NORMAL;
++ cchar_t e;
++ wint_t f;
++ int g = getattrs(stdscr);
++ int h = getcurx(stdscr) + getmaxx(stdscr);
++ initscr();
++ init_pair(1, COLOR_WHITE, COLOR_RED);
++ wattr_set(stdscr, d, 0, NULL);
++ wget_wch(stdscr, &f);
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_header_ncursesw_h=yes
++else
++ ax_cv_header_ncursesw_h=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_header_ncursesw_h" >&5
++$as_echo "$ax_cv_header_ncursesw_h" >&6; }
++ if test "x$ax_cv_header_ncursesw_h" = xyes; then :
++
++ ax_cv_curses_enhanced=yes
++ ax_cv_curses_color=yes
++ ax_cv_curses_obsolete=yes
++
++$as_echo "#define HAVE_CURSES_ENHANCED 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_COLOR 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_OBSOLETE 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_NCURSESW_H 1" >>confdefs.h
++
++
++fi
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working ncurses.h" >&5
++$as_echo_n "checking for working ncurses.h... " >&6; }
++if ${ax_cv_header_ncurses_h_with_ncursesw+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #define _XOPEN_SOURCE_EXTENDED 1
++ #include <ncurses.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ chtype c = COLOR_PAIR(1) & A_COLOR;
++ attr_t d = WA_NORMAL;
++ cchar_t e;
++ wint_t f;
++ int g = getattrs(stdscr);
++ int h = getcurx(stdscr) + getmaxx(stdscr);
++ initscr();
++ init_pair(1, COLOR_WHITE, COLOR_RED);
++ wattr_set(stdscr, d, 0, NULL);
++ wget_wch(stdscr, &f);
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_header_ncurses_h_with_ncursesw=yes
++else
++ ax_cv_header_ncurses_h_with_ncursesw=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_header_ncurses_h_with_ncursesw" >&5
++$as_echo "$ax_cv_header_ncurses_h_with_ncursesw" >&6; }
++ if test "x$ax_cv_header_ncurses_h_with_ncursesw" = xyes; then :
++
++ ax_cv_curses_enhanced=yes
++ ax_cv_curses_color=yes
++ ax_cv_curses_obsolete=yes
++
++$as_echo "#define HAVE_CURSES_ENHANCED 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_COLOR 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_OBSOLETE 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_NCURSES_H 1" >>confdefs.h
++
++
++fi
++
++ if test "x$ax_cv_header_ncursesw_curses_h" = xno && test "x$ax_cv_header_ncursesw_h" = xno && test "x$ax_cv_header_ncurses_h_with_ncursesw" = xno; then :
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: could not find a working ncursesw/curses.h, ncursesw.h or ncurses.h" >&5
++$as_echo "$as_me: WARNING: could not find a working ncursesw/curses.h, ncursesw.h or ncurses.h" >&2;}
++
++fi
++
++fi
++
++fi
++ unset pkg_cv__ax_cv_ncursesw_lib
++ unset pkg_cv__ax_cv_ncursesw_cppflags
++
++ # Test for Ncurses
++ if test "x$CURSES_LIB" = x && test "x$with_ncurses" != xno && test "x$ax_cv_curses_which" = xno; then :
++
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for ncurses via pkg-config" >&5
++$as_echo_n "checking for ncurses via pkg-config... " >&6; }
++
++ if test -n "$_ax_cv_ncurses_lib"; then
++ pkg_cv__ax_cv_ncurses_lib="$_ax_cv_ncurses_lib"
++ elif test -n "$PKG_CONFIG"; then
++ if test -n "$PKG_CONFIG" && \
++ { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"ncurses\""; } >&5
++ ($PKG_CONFIG --exists --print-errors "ncurses") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; then
++ pkg_cv__ax_cv_ncurses_lib=`$PKG_CONFIG --libs "ncurses" 2>/dev/null`
++ test "x$?" != "x0" && pkg_failed=yes
++else
++ pkg_failed=yes
++fi
++ else
++ pkg_failed=untried
++fi
++ if test -n "$_ax_cv_ncurses_cppflags"; then
++ pkg_cv__ax_cv_ncurses_cppflags="$_ax_cv_ncurses_cppflags"
++ elif test -n "$PKG_CONFIG"; then
++ if test -n "$PKG_CONFIG" && \
++ { { $as_echo "$as_me:${as_lineno-$LINENO}: \$PKG_CONFIG --exists --print-errors \"ncurses\""; } >&5
++ ($PKG_CONFIG --exists --print-errors "ncurses") 2>&5
++ ac_status=$?
++ $as_echo "$as_me:${as_lineno-$LINENO}: \$? = $ac_status" >&5
++ test $ac_status = 0; }; then
++ pkg_cv__ax_cv_ncurses_cppflags=`$PKG_CONFIG --cflags "ncurses" 2>/dev/null`
++ test "x$?" != "x0" && pkg_failed=yes
++else
++ pkg_failed=yes
++fi
++ else
++ pkg_failed=untried
++fi
++
++ if test "x$pkg_failed" = "xyes" || test "x$pkg_failed" = "xuntried"; then :
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++ # No suitable .pc file found, have to find flags via fallback
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for ncurses via fallback" >&5
++$as_echo_n "checking for ncurses via fallback... " >&6; }
++if ${ax_cv_ncurses+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ $as_echo
++ pkg_cv__ax_cv_ncurses_lib="-lncurses"
++ pkg_cv__ax_cv_ncurses_cppflags="$CURSES_CPPFLAGS"
++ LIBS="$ax_saved_LIBS $pkg_cv__ax_cv_ncurses_lib"
++ CPPFLAGS="$ax_saved_CPPFLAGS $pkg_cv__ax_cv_ncurses_cppflags"
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for initscr() with $pkg_cv__ax_cv_ncurses_lib" >&5
++$as_echo_n "checking for initscr() with $pkg_cv__ax_cv_ncurses_lib... " >&6; }
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char initscr ();
++int
++main ()
++{
++return initscr ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
++$as_echo "yes" >&6; }
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for nodelay() with $pkg_cv__ax_cv_ncurses_lib" >&5
++$as_echo_n "checking for nodelay() with $pkg_cv__ax_cv_ncurses_lib... " >&6; }
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char nodelay ();
++int
++main ()
++{
++return nodelay ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++
++ ax_cv_ncurses=yes
++
++else
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: no" >&5
++$as_echo "no" >&6; }
++ pkg_cv__ax_cv_ncurses_lib="$pkg_cv__ax_cv_ncurses_lib -ltinfo"
++
++ LIBS="$ax_saved_LIBS $pkg_cv__ax_cv_ncurses_lib"
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for nodelay() with $pkg_cv__ax_cv_ncurses_lib" >&5
++$as_echo_n "checking for nodelay() with $pkg_cv__ax_cv_ncurses_lib... " >&6; }
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char nodelay ();
++int
++main ()
++{
++return nodelay ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++
++ ax_cv_ncurses=yes
++
++else
++
++ ax_cv_ncurses=no
++
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++else
++
++ ax_cv_ncurses=no
++
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_ncurses" >&5
++$as_echo "$ax_cv_ncurses" >&6; }
++
++else
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: result: yes" >&5
++$as_echo "yes" >&6; }
++ # Found .pc file, using its information
++ LIBS="$ax_saved_LIBS $pkg_cv__ax_cv_ncurses_lib"
++ CPPFLAGS="$ax_saved_CPPFLAGS $pkg_cv__ax_cv_ncurses_cppflags"
++ ax_cv_ncurses=yes
++
++fi
++
++
++ if test "x$ax_cv_ncurses" = xno && test "x$with_ncurses" = xyes; then :
++
++ as_fn_error $? "--with-ncurses specified but could not find Ncurses library" "$LINENO" 5
++
++fi
++
++ if test "x$ax_cv_ncurses" = xyes; then :
++
++ ax_cv_curses=yes
++ ax_cv_curses_which=ncurses
++ CURSES_LIB="$pkg_cv__ax_cv_ncurses_lib"
++ CURSES_CPPFLAGS="$pkg_cv__ax_cv_ncurses_cppflags"
++
++$as_echo "#define HAVE_NCURSES 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES 1" >>confdefs.h
++
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working ncurses/curses.h" >&5
++$as_echo_n "checking for working ncurses/curses.h... " >&6; }
++if ${ax_cv_header_ncurses_curses_h+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #include <ncurses/curses.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ chtype c = COLOR_PAIR(1) & A_COLOR;
++ int g = getattrs(stdscr);
++ int h = getcurx(stdscr) + getmaxx(stdscr);
++ initscr();
++ init_pair(1, COLOR_WHITE, COLOR_RED);
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_header_ncurses_curses_h=yes
++else
++ ax_cv_header_ncurses_curses_h=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_header_ncurses_curses_h" >&5
++$as_echo "$ax_cv_header_ncurses_curses_h" >&6; }
++ if test "x$ax_cv_header_ncurses_curses_h" = xyes; then :
++
++ ax_cv_curses_color=yes
++ ax_cv_curses_obsolete=yes
++
++$as_echo "#define HAVE_CURSES_COLOR 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_OBSOLETE 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_NCURSES_CURSES_H 1" >>confdefs.h
++
++
++fi
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working ncurses.h" >&5
++$as_echo_n "checking for working ncurses.h... " >&6; }
++if ${ax_cv_header_ncurses_h+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #include <ncurses.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ chtype c = COLOR_PAIR(1) & A_COLOR;
++ int g = getattrs(stdscr);
++ int h = getcurx(stdscr) + getmaxx(stdscr);
++ initscr();
++ init_pair(1, COLOR_WHITE, COLOR_RED);
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_header_ncurses_h=yes
++else
++ ax_cv_header_ncurses_h=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_header_ncurses_h" >&5
++$as_echo "$ax_cv_header_ncurses_h" >&6; }
++ if test "x$ax_cv_header_ncurses_h" = xyes; then :
++
++ ax_cv_curses_color=yes
++ ax_cv_curses_obsolete=yes
++
++$as_echo "#define HAVE_CURSES_COLOR 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_OBSOLETE 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_NCURSES_H 1" >>confdefs.h
++
++
++fi
++
++ if test "x$ax_cv_header_ncurses_curses_h" = xno && test "x$ax_cv_header_ncurses_h" = xno; then :
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: could not find a working ncurses/curses.h or ncurses.h" >&5
++$as_echo "$as_me: WARNING: could not find a working ncurses/curses.h or ncurses.h" >&2;}
++
++fi
++
++fi
++
++fi
++ unset pkg_cv__ax_cv_ncurses_lib
++ unset pkg_cv__ax_cv_ncurses_cppflags
++
++ # Test for plain Curses (or if CURSES_LIB was set by user)
++ if test "x$with_plaincurses" != xno && test "x$ax_cv_curses_which" = xno; then :
++
++ if test "x$CURSES_LIB" != x; then :
++
++ LIBS="$ax_saved_LIBS $CURSES_LIB"
++
++else
++
++ LIBS="$ax_saved_LIBS -lcurses"
++
++fi
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for Curses library" >&5
++$as_echo_n "checking for Curses library... " >&6; }
++if ${ax_cv_plaincurses+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char initscr ();
++int
++main ()
++{
++return initscr ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_plaincurses=yes
++else
++ ax_cv_plaincurses=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_plaincurses" >&5
++$as_echo "$ax_cv_plaincurses" >&6; }
++
++ if test "x$ax_cv_plaincurses" = xyes; then :
++
++ ax_cv_curses=yes
++ ax_cv_curses_which=plaincurses
++ if test "x$CURSES_LIB" = x; then :
++
++ CURSES_LIB="-lcurses"
++
++fi
++
++$as_echo "#define HAVE_CURSES 1" >>confdefs.h
++
++
++ # Check for base conformance (and header file)
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for working curses.h" >&5
++$as_echo_n "checking for working curses.h... " >&6; }
++if ${ax_cv_header_curses_h+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #include <curses.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ initscr();
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_header_curses_h=yes
++else
++ ax_cv_header_curses_h=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_header_curses_h" >&5
++$as_echo "$ax_cv_header_curses_h" >&6; }
++ if test "x$ax_cv_header_curses_h" = xyes; then :
++
++
++$as_echo "#define HAVE_CURSES_H 1" >>confdefs.h
++
++
++ # Check for X/Open Enhanced conformance
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for X/Open Enhanced Curses conformance" >&5
++$as_echo_n "checking for X/Open Enhanced Curses conformance... " >&6; }
++if ${ax_cv_plaincurses_enhanced+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #define _XOPEN_SOURCE_EXTENDED 1
++ #include <curses.h>
++ #ifndef _XOPEN_CURSES
++ #error "this Curses library is not enhanced"
++ "this Curses library is not enhanced"
++ #endif
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ chtype c = COLOR_PAIR(1) & A_COLOR;
++ attr_t d = WA_NORMAL;
++ cchar_t e;
++ wint_t f;
++ initscr();
++ init_pair(1, COLOR_WHITE, COLOR_RED);
++ wattr_set(stdscr, d, 0, NULL);
++ wget_wch(stdscr, &f);
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_plaincurses_enhanced=yes
++else
++ ax_cv_plaincurses_enhanced=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_plaincurses_enhanced" >&5
++$as_echo "$ax_cv_plaincurses_enhanced" >&6; }
++ if test "x$ax_cv_plaincurses_enhanced" = xyes; then :
++
++ ax_cv_curses_enhanced=yes
++ ax_cv_curses_color=yes
++
++$as_echo "#define HAVE_CURSES_ENHANCED 1" >>confdefs.h
++
++
++$as_echo "#define HAVE_CURSES_COLOR 1" >>confdefs.h
++
++
++fi
++
++ # Check for color functions
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for Curses color functions" >&5
++$as_echo_n "checking for Curses color functions... " >&6; }
++if ${ax_cv_plaincurses_color+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #define _XOPEN_SOURCE_EXTENDED 1
++ #include <curses.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ chtype c = COLOR_PAIR(1) & A_COLOR;
++ initscr();
++ init_pair(1, COLOR_WHITE, COLOR_RED);
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_plaincurses_color=yes
++else
++ ax_cv_plaincurses_color=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_plaincurses_color" >&5
++$as_echo "$ax_cv_plaincurses_color" >&6; }
++ if test "x$ax_cv_plaincurses_color" = xyes; then :
++
++ ax_cv_curses_color=yes
++
++$as_echo "#define HAVE_CURSES_COLOR 1" >>confdefs.h
++
++
++fi
++
++ # Check for obsolete functions
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: checking for obsolete Curses functions" >&5
++$as_echo_n "checking for obsolete Curses functions... " >&6; }
++if ${ax_cv_plaincurses_obsolete+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++
++ cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++ #include <curses.h>
++
++int
++main ()
++{
++
++ chtype a = A_BOLD;
++ int b = KEY_LEFT;
++ int g = getattrs(stdscr);
++ int h = getcurx(stdscr) + getmaxx(stdscr);
++ initscr();
++
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ax_cv_plaincurses_obsolete=yes
++else
++ ax_cv_plaincurses_obsolete=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ax_cv_plaincurses_obsolete" >&5
++$as_echo "$ax_cv_plaincurses_obsolete" >&6; }
++ if test "x$ax_cv_plaincurses_obsolete" = xyes; then :
++
++ ax_cv_curses_obsolete=yes
++
++$as_echo "#define HAVE_CURSES_OBSOLETE 1" >>confdefs.h
++
++
++fi
++
++fi
++
++ if test "x$ax_cv_header_curses_h" = xno; then :
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: could not find a working curses.h" >&5
++$as_echo "$as_me: WARNING: could not find a working curses.h" >&2;}
++
++fi
++
++fi
++
++fi
++
++ if test "x$ax_cv_curses" != xyes; then :
++ ax_cv_curses=no
++fi
++ if test "x$ax_cv_curses_enhanced" != xyes; then :
++ ax_cv_curses_enhanced=no
++fi
++ if test "x$ax_cv_curses_color" != xyes; then :
++ ax_cv_curses_color=no
++fi
++ if test "x$ax_cv_curses_obsolete" != xyes; then :
++ ax_cv_curses_obsolete=no
++fi
++
++ LIBS=$ax_saved_LIBS
++ CPPFLAGS=$ax_saved_CPPFLAGS
++
++ unset ax_saved_LIBS
++ unset ax_saved_CPPFLAGS
++
++ if test "$ax_cv_curses" != yes; then
++ as_fn_error $? "curses development files not found
++
++The 'samtools tview' command uses the curses text user interface library.
++Building samtools with tview requires curses/ncurses/etc development files
++to be installed on the build machine; you may need to ensure a package such
++as libncurses5-dev (on Debian or Ubuntu Linux) or ncurses-devel (on RPM-based
++Linux distributions) is installed.
++
++FAILED. Either configure --without-curses or resolve this error to build
++samtools successfully." "$LINENO" 5
++ fi
++fi
++
++save_LIBS=$LIBS
++zlib_devel=ok
++ac_fn_c_check_header_compile "$LINENO" "zlib.h" "ac_cv_header_zlib_h" ";
++"
++if test "x$ac_cv_header_zlib_h" = xyes; then :
++
++else
++ zlib_devel=missing
++fi
++
++
++{ $as_echo "$as_me:${as_lineno-$LINENO}: checking for inflate in -lz" >&5
++$as_echo_n "checking for inflate in -lz... " >&6; }
++if ${ac_cv_lib_z_inflate+:} false; then :
++ $as_echo_n "(cached) " >&6
++else
++ ac_check_lib_save_LIBS=$LIBS
++LIBS="-lz $LIBS"
++cat confdefs.h - <<_ACEOF >conftest.$ac_ext
++/* end confdefs.h. */
++
++/* Override any GCC internal prototype to avoid an error.
++ Use char because int might match the return type of a GCC
++ builtin and then its argument prototype would still apply. */
++#ifdef __cplusplus
++extern "C"
++#endif
++char inflate ();
++int
++main ()
++{
++return inflate ();
++ ;
++ return 0;
++}
++_ACEOF
++if ac_fn_c_try_link "$LINENO"; then :
++ ac_cv_lib_z_inflate=yes
++else
++ ac_cv_lib_z_inflate=no
++fi
++rm -f core conftest.err conftest.$ac_objext \
++ conftest$ac_exeext conftest.$ac_ext
++LIBS=$ac_check_lib_save_LIBS
++fi
++{ $as_echo "$as_me:${as_lineno-$LINENO}: result: $ac_cv_lib_z_inflate" >&5
++$as_echo "$ac_cv_lib_z_inflate" >&6; }
++if test "x$ac_cv_lib_z_inflate" = xyes; then :
++ cat >>confdefs.h <<_ACEOF
++#define HAVE_LIBZ 1
++_ACEOF
++
++ LIBS="-lz $LIBS"
++
++else
++ zlib_devel=missing
++fi
++
++LIBS=$save_LIBS
++
++if test $zlib_devel != ok; then
++ as_fn_error $? "zlib development files not found
++
++Samtools uses compression routines from the zlib library <http://zlib.net>.
++Building samtools requires zlib development files to be installed on the build
++machine; you may need to ensure a package such as zlib1g-dev (on Debian or
++Ubuntu Linux) or zlib-devel (on RPM-based Linux distributions) is installed.
++
++FAILED. This error must be resolved in order to build samtools successfully." "$LINENO" 5
++fi
++
++ac_config_files="$ac_config_files config.mk"
++
++cat >confcache <<\_ACEOF
++# This file is a shell script that caches the results of configure
++# tests run on this system so they can be shared between configure
++# scripts and configure runs, see configure's option --config-cache.
++# It is not useful on other systems. If it contains results you don't
++# want to keep, you may remove or edit it.
++#
++# config.status only pays attention to the cache file if you give it
++# the --recheck option to rerun configure.
++#
++# `ac_cv_env_foo' variables (set or unset) will be overridden when
++# loading this file, other *unset* `ac_cv_foo' will be assigned the
++# following values.
++
++_ACEOF
++
++# The following way of writing the cache mishandles newlines in values,
++# but we know of no workaround that is simple, portable, and efficient.
++# So, we kill variables containing newlines.
++# Ultrix sh set writes to stderr and can't be redirected directly,
++# and sets the high bit in the cache file unless we assign to the vars.
++(
++ for ac_var in `(set) 2>&1 | sed -n 's/^\([a-zA-Z_][a-zA-Z0-9_]*\)=.*/\1/p'`; do
++ eval ac_val=\$$ac_var
++ case $ac_val in #(
++ *${as_nl}*)
++ case $ac_var in #(
++ *_cv_*) { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: cache variable $ac_var contains a newline" >&5
++$as_echo "$as_me: WARNING: cache variable $ac_var contains a newline" >&2;} ;;
++ esac
++ case $ac_var in #(
++ _ | IFS | as_nl) ;; #(
++ BASH_ARGV | BASH_SOURCE) eval $ac_var= ;; #(
++ *) { eval $ac_var=; unset $ac_var;} ;;
++ esac ;;
++ esac
++ done
++
++ (set) 2>&1 |
++ case $as_nl`(ac_space=' '; set) 2>&1` in #(
++ *${as_nl}ac_space=\ *)
++ # `set' does not quote correctly, so add quotes: double-quote
++ # substitution turns \\\\ into \\, and sed turns \\ into \.
++ sed -n \
++ "s/'/'\\\\''/g;
++ s/^\\([_$as_cr_alnum]*_cv_[_$as_cr_alnum]*\\)=\\(.*\\)/\\1='\\2'/p"
++ ;; #(
++ *)
++ # `set' quotes correctly as required by POSIX, so do not add quotes.
++ sed -n "/^[_$as_cr_alnum]*_cv_[_$as_cr_alnum]*=/p"
++ ;;
++ esac |
++ sort
++) |
++ sed '
++ /^ac_cv_env_/b end
++ t clear
++ :clear
++ s/^\([^=]*\)=\(.*[{}].*\)$/test "${\1+set}" = set || &/
++ t end
++ s/^\([^=]*\)=\(.*\)$/\1=${\1=\2}/
++ :end' >>confcache
++if diff "$cache_file" confcache >/dev/null 2>&1; then :; else
++ if test -w "$cache_file"; then
++ if test "x$cache_file" != "x/dev/null"; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: updating cache $cache_file" >&5
++$as_echo "$as_me: updating cache $cache_file" >&6;}
++ if test ! -f "$cache_file" || test -h "$cache_file"; then
++ cat confcache >"$cache_file"
++ else
++ case $cache_file in #(
++ */* | ?:*)
++ mv -f confcache "$cache_file"$$ &&
++ mv -f "$cache_file"$$ "$cache_file" ;; #(
++ *)
++ mv -f confcache "$cache_file" ;;
++ esac
++ fi
++ fi
++ else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: not updating unwritable cache $cache_file" >&5
++$as_echo "$as_me: not updating unwritable cache $cache_file" >&6;}
++ fi
++fi
++rm -f confcache
++
++test "x$prefix" = xNONE && prefix=$ac_default_prefix
++# Let make expand exec_prefix.
++test "x$exec_prefix" = xNONE && exec_prefix='${prefix}'
++
++DEFS=-DHAVE_CONFIG_H
++
++ac_libobjs=
++ac_ltlibobjs=
++U=
++for ac_i in : $LIBOBJS; do test "x$ac_i" = x: && continue
++ # 1. Remove the extension, and $U if already installed.
++ ac_script='s/\$U\././;s/\.o$//;s/\.obj$//'
++ ac_i=`$as_echo "$ac_i" | sed "$ac_script"`
++ # 2. Prepend LIBOBJDIR. When used with automake>=1.10 LIBOBJDIR
++ # will be set to the directory where LIBOBJS objects are built.
++ as_fn_append ac_libobjs " \${LIBOBJDIR}$ac_i\$U.$ac_objext"
++ as_fn_append ac_ltlibobjs " \${LIBOBJDIR}$ac_i"'$U.lo'
++done
++LIBOBJS=$ac_libobjs
++
++LTLIBOBJS=$ac_ltlibobjs
++
++
++
++: "${CONFIG_STATUS=./config.status}"
++ac_write_fail=0
++ac_clean_files_save=$ac_clean_files
++ac_clean_files="$ac_clean_files $CONFIG_STATUS"
++{ $as_echo "$as_me:${as_lineno-$LINENO}: creating $CONFIG_STATUS" >&5
++$as_echo "$as_me: creating $CONFIG_STATUS" >&6;}
++as_write_fail=0
++cat >$CONFIG_STATUS <<_ASEOF || as_write_fail=1
++#! $SHELL
++# Generated by $as_me.
++# Run this file to recreate the current configuration.
++# Compiler output produced by configure, useful for debugging
++# configure, is in config.log if it exists.
++
++debug=false
++ac_cs_recheck=false
++ac_cs_silent=false
++
++SHELL=\${CONFIG_SHELL-$SHELL}
++export SHELL
++_ASEOF
++cat >>$CONFIG_STATUS <<\_ASEOF || as_write_fail=1
++## -------------------- ##
++## M4sh Initialization. ##
++## -------------------- ##
++
++# Be more Bourne compatible
++DUALCASE=1; export DUALCASE # for MKS sh
++if test -n "${ZSH_VERSION+set}" && (emulate sh) >/dev/null 2>&1; then :
++ emulate sh
++ NULLCMD=:
++ # Pre-4.2 versions of Zsh do word splitting on ${1+"$@"}, which
++ # is contrary to our usage. Disable this feature.
++ alias -g '${1+"$@"}'='"$@"'
++ setopt NO_GLOB_SUBST
++else
++ case `(set -o) 2>/dev/null` in #(
++ *posix*) :
++ set -o posix ;; #(
++ *) :
++ ;;
++esac
++fi
++
++
++as_nl='
++'
++export as_nl
++# Printing a long string crashes Solaris 7 /usr/bin/printf.
++as_echo='\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\\'
++as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo
++as_echo=$as_echo$as_echo$as_echo$as_echo$as_echo$as_echo
++# Prefer a ksh shell builtin over an external printf program on Solaris,
++# but without wasting forks for bash or zsh.
++if test -z "$BASH_VERSION$ZSH_VERSION" \
++ && (test "X`print -r -- $as_echo`" = "X$as_echo") 2>/dev/null; then
++ as_echo='print -r --'
++ as_echo_n='print -rn --'
++elif (test "X`printf %s $as_echo`" = "X$as_echo") 2>/dev/null; then
++ as_echo='printf %s\n'
++ as_echo_n='printf %s'
++else
++ if test "X`(/usr/ucb/echo -n -n $as_echo) 2>/dev/null`" = "X-n $as_echo"; then
++ as_echo_body='eval /usr/ucb/echo -n "$1$as_nl"'
++ as_echo_n='/usr/ucb/echo -n'
++ else
++ as_echo_body='eval expr "X$1" : "X\\(.*\\)"'
++ as_echo_n_body='eval
++ arg=$1;
++ case $arg in #(
++ *"$as_nl"*)
++ expr "X$arg" : "X\\(.*\\)$as_nl";
++ arg=`expr "X$arg" : ".*$as_nl\\(.*\\)"`;;
++ esac;
++ expr "X$arg" : "X\\(.*\\)" | tr -d "$as_nl"
++ '
++ export as_echo_n_body
++ as_echo_n='sh -c $as_echo_n_body as_echo'
++ fi
++ export as_echo_body
++ as_echo='sh -c $as_echo_body as_echo'
++fi
++
++# The user is always right.
++if test "${PATH_SEPARATOR+set}" != set; then
++ PATH_SEPARATOR=:
++ (PATH='/bin;/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 && {
++ (PATH='/bin:/bin'; FPATH=$PATH; sh -c :) >/dev/null 2>&1 ||
++ PATH_SEPARATOR=';'
++ }
++fi
++
++
++# IFS
++# We need space, tab and new line, in precisely that order. Quoting is
++# there to prevent editors from complaining about space-tab.
++# (If _AS_PATH_WALK were called with IFS unset, it would disable word
++# splitting by setting IFS to empty value.)
++IFS=" "" $as_nl"
++
++# Find who we are. Look in the path if we contain no directory separator.
++as_myself=
++case $0 in #((
++ *[\\/]* ) as_myself=$0 ;;
++ *) as_save_IFS=$IFS; IFS=$PATH_SEPARATOR
++for as_dir in $PATH
++do
++ IFS=$as_save_IFS
++ test -z "$as_dir" && as_dir=.
++ test -r "$as_dir/$0" && as_myself=$as_dir/$0 && break
++ done
++IFS=$as_save_IFS
++
++ ;;
++esac
++# We did not find ourselves, most probably we were run as `sh COMMAND'
++# in which case we are not to be found in the path.
++if test "x$as_myself" = x; then
++ as_myself=$0
++fi
++if test ! -f "$as_myself"; then
++ $as_echo "$as_myself: error: cannot find myself; rerun with an absolute file name" >&2
++ exit 1
++fi
++
++# Unset variables that we do not need and which cause bugs (e.g. in
++# pre-3.0 UWIN ksh). But do not cause bugs in bash 2.01; the "|| exit 1"
++# suppresses any "Segmentation fault" message there. '((' could
++# trigger a bug in pdksh 5.2.14.
++for as_var in BASH_ENV ENV MAIL MAILPATH
++do eval test x\${$as_var+set} = xset \
++ && ( (unset $as_var) || exit 1) >/dev/null 2>&1 && unset $as_var || :
++done
++PS1='$ '
++PS2='> '
++PS4='+ '
++
++# NLS nuisances.
++LC_ALL=C
++export LC_ALL
++LANGUAGE=C
++export LANGUAGE
++
++# CDPATH.
++(unset CDPATH) >/dev/null 2>&1 && unset CDPATH
++
++
++# as_fn_error STATUS ERROR [LINENO LOG_FD]
++# ----------------------------------------
++# Output "`basename $0`: error: ERROR" to stderr. If LINENO and LOG_FD are
++# provided, also output the error to LOG_FD, referencing LINENO. Then exit the
++# script with STATUS, using 1 if that was 0.
++as_fn_error ()
++{
++ as_status=$1; test $as_status -eq 0 && as_status=1
++ if test "$4"; then
++ as_lineno=${as_lineno-"$3"} as_lineno_stack=as_lineno_stack=$as_lineno_stack
++ $as_echo "$as_me:${as_lineno-$LINENO}: error: $2" >&$4
++ fi
++ $as_echo "$as_me: error: $2" >&2
++ as_fn_exit $as_status
++} # as_fn_error
++
++
++# as_fn_set_status STATUS
++# -----------------------
++# Set $? to STATUS, without forking.
++as_fn_set_status ()
++{
++ return $1
++} # as_fn_set_status
++
++# as_fn_exit STATUS
++# -----------------
++# Exit the shell with STATUS, even in a "trap 0" or "set -e" context.
++as_fn_exit ()
++{
++ set +e
++ as_fn_set_status $1
++ exit $1
++} # as_fn_exit
++
++# as_fn_unset VAR
++# ---------------
++# Portably unset VAR.
++as_fn_unset ()
++{
++ { eval $1=; unset $1;}
++}
++as_unset=as_fn_unset
++# as_fn_append VAR VALUE
++# ----------------------
++# Append the text in VALUE to the end of the definition contained in VAR. Take
++# advantage of any shell optimizations that allow amortized linear growth over
++# repeated appends, instead of the typical quadratic growth present in naive
++# implementations.
++if (eval "as_var=1; as_var+=2; test x\$as_var = x12") 2>/dev/null; then :
++ eval 'as_fn_append ()
++ {
++ eval $1+=\$2
++ }'
++else
++ as_fn_append ()
++ {
++ eval $1=\$$1\$2
++ }
++fi # as_fn_append
++
++# as_fn_arith ARG...
++# ------------------
++# Perform arithmetic evaluation on the ARGs, and store the result in the
++# global $as_val. Take advantage of shells that can avoid forks. The arguments
++# must be portable across $(()) and expr.
++if (eval "test \$(( 1 + 1 )) = 2") 2>/dev/null; then :
++ eval 'as_fn_arith ()
++ {
++ as_val=$(( $* ))
++ }'
++else
++ as_fn_arith ()
++ {
++ as_val=`expr "$@" || test $? -eq 1`
++ }
++fi # as_fn_arith
++
++
++if expr a : '\(a\)' >/dev/null 2>&1 &&
++ test "X`expr 00001 : '.*\(...\)'`" = X001; then
++ as_expr=expr
++else
++ as_expr=false
++fi
++
++if (basename -- /) >/dev/null 2>&1 && test "X`basename -- / 2>&1`" = "X/"; then
++ as_basename=basename
++else
++ as_basename=false
++fi
++
++if (as_dir=`dirname -- /` && test "X$as_dir" = X/) >/dev/null 2>&1; then
++ as_dirname=dirname
++else
++ as_dirname=false
++fi
++
++as_me=`$as_basename -- "$0" ||
++$as_expr X/"$0" : '.*/\([^/][^/]*\)/*$' \| \
++ X"$0" : 'X\(//\)$' \| \
++ X"$0" : 'X\(/\)' \| . 2>/dev/null ||
++$as_echo X/"$0" |
++ sed '/^.*\/\([^/][^/]*\)\/*$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\/\(\/\).*/{
++ s//\1/
++ q
++ }
++ s/.*/./; q'`
++
++# Avoid depending upon Character Ranges.
++as_cr_letters='abcdefghijklmnopqrstuvwxyz'
++as_cr_LETTERS='ABCDEFGHIJKLMNOPQRSTUVWXYZ'
++as_cr_Letters=$as_cr_letters$as_cr_LETTERS
++as_cr_digits='0123456789'
++as_cr_alnum=$as_cr_Letters$as_cr_digits
++
++ECHO_C= ECHO_N= ECHO_T=
++case `echo -n x` in #(((((
++-n*)
++ case `echo 'xy\c'` in
++ *c*) ECHO_T=' ';; # ECHO_T is single tab character.
++ xy) ECHO_C='\c';;
++ *) echo `echo ksh88 bug on AIX 6.1` > /dev/null
++ ECHO_T=' ';;
++ esac;;
++*)
++ ECHO_N='-n';;
++esac
++
++rm -f conf$$ conf$$.exe conf$$.file
++if test -d conf$$.dir; then
++ rm -f conf$$.dir/conf$$.file
++else
++ rm -f conf$$.dir
++ mkdir conf$$.dir 2>/dev/null
++fi
++if (echo >conf$$.file) 2>/dev/null; then
++ if ln -s conf$$.file conf$$ 2>/dev/null; then
++ as_ln_s='ln -s'
++ # ... but there are two gotchas:
++ # 1) On MSYS, both `ln -s file dir' and `ln file dir' fail.
++ # 2) DJGPP < 2.04 has no symlinks; `ln -s' creates a wrapper executable.
++ # In both cases, we have to default to `cp -pR'.
++ ln -s conf$$.file conf$$.dir 2>/dev/null && test ! -f conf$$.exe ||
++ as_ln_s='cp -pR'
++ elif ln conf$$.file conf$$ 2>/dev/null; then
++ as_ln_s=ln
++ else
++ as_ln_s='cp -pR'
++ fi
++else
++ as_ln_s='cp -pR'
++fi
++rm -f conf$$ conf$$.exe conf$$.dir/conf$$.file conf$$.file
++rmdir conf$$.dir 2>/dev/null
++
++
++# as_fn_mkdir_p
++# -------------
++# Create "$as_dir" as a directory, including parents if necessary.
++as_fn_mkdir_p ()
++{
++
++ case $as_dir in #(
++ -*) as_dir=./$as_dir;;
++ esac
++ test -d "$as_dir" || eval $as_mkdir_p || {
++ as_dirs=
++ while :; do
++ case $as_dir in #(
++ *\'*) as_qdir=`$as_echo "$as_dir" | sed "s/'/'\\\\\\\\''/g"`;; #'(
++ *) as_qdir=$as_dir;;
++ esac
++ as_dirs="'$as_qdir' $as_dirs"
++ as_dir=`$as_dirname -- "$as_dir" ||
++$as_expr X"$as_dir" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
++ X"$as_dir" : 'X\(//\)[^/]' \| \
++ X"$as_dir" : 'X\(//\)$' \| \
++ X"$as_dir" : 'X\(/\)' \| . 2>/dev/null ||
++$as_echo X"$as_dir" |
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
++ s/.*/./; q'`
++ test -d "$as_dir" && break
++ done
++ test -z "$as_dirs" || eval "mkdir $as_dirs"
++ } || test -d "$as_dir" || as_fn_error $? "cannot create directory $as_dir"
++
++
++} # as_fn_mkdir_p
++if mkdir -p . 2>/dev/null; then
++ as_mkdir_p='mkdir -p "$as_dir"'
++else
++ test -d ./-p && rmdir ./-p
++ as_mkdir_p=false
++fi
++
++
++# as_fn_executable_p FILE
++# -----------------------
++# Test if FILE is an executable regular file.
++as_fn_executable_p ()
++{
++ test -f "$1" && test -x "$1"
++} # as_fn_executable_p
++as_test_x='test -x'
++as_executable_p=as_fn_executable_p
++
++# Sed expression to map a string onto a valid CPP name.
++as_tr_cpp="eval sed 'y%*$as_cr_letters%P$as_cr_LETTERS%;s%[^_$as_cr_alnum]%_%g'"
++
++# Sed expression to map a string onto a valid variable name.
++as_tr_sh="eval sed 'y%*+%pp%;s%[^_$as_cr_alnum]%_%g'"
++
++
++exec 6>&1
++## ----------------------------------- ##
++## Main body of $CONFIG_STATUS script. ##
++## ----------------------------------- ##
++_ASEOF
++test $as_write_fail = 0 && chmod +x $CONFIG_STATUS || ac_write_fail=1
++
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++# Save the log message, to keep $0 and so on meaningful, and to
++# report actual input values of CONFIG_FILES etc. instead of their
++# values after options handling.
++ac_log="
++This file was extended by Samtools $as_me 1.3.1, which was
++generated by GNU Autoconf 2.69. Invocation command line was
++
++ CONFIG_FILES = $CONFIG_FILES
++ CONFIG_HEADERS = $CONFIG_HEADERS
++ CONFIG_LINKS = $CONFIG_LINKS
++ CONFIG_COMMANDS = $CONFIG_COMMANDS
++ $ $0 $@
++
++on `(hostname || uname -n) 2>/dev/null | sed 1q`
++"
++
++_ACEOF
++
++case $ac_config_files in *"
++"*) set x $ac_config_files; shift; ac_config_files=$*;;
++esac
++
++case $ac_config_headers in *"
++"*) set x $ac_config_headers; shift; ac_config_headers=$*;;
++esac
++
++
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++# Files that config.status was made for.
++config_files="$ac_config_files"
++config_headers="$ac_config_headers"
++
++_ACEOF
++
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++ac_cs_usage="\
++\`$as_me' instantiates files and other configuration actions
++from templates according to the current configuration. Unless the files
++and actions are specified as TAGs, all are instantiated by default.
++
++Usage: $0 [OPTION]... [TAG]...
++
++ -h, --help print this help, then exit
++ -V, --version print version number and configuration settings, then exit
++ --config print configuration, then exit
++ -q, --quiet, --silent
++ do not print progress messages
++ -d, --debug don't remove temporary files
++ --recheck update $as_me by reconfiguring in the same conditions
++ --file=FILE[:TEMPLATE]
++ instantiate the configuration file FILE
++ --header=FILE[:TEMPLATE]
++ instantiate the configuration header FILE
++
++Configuration files:
++$config_files
++
++Configuration headers:
++$config_headers
++
++Report bugs to <samtools-help at lists.sourceforge.net>.
++Samtools home page: <http://www.htslib.org/>."
++
++_ACEOF
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++ac_cs_config="`$as_echo "$ac_configure_args" | sed 's/^ //; s/[\\""\`\$]/\\\\&/g'`"
++ac_cs_version="\\
++Samtools config.status 1.3.1
++configured by $0, generated by GNU Autoconf 2.69,
++ with options \\"\$ac_cs_config\\"
++
++Copyright (C) 2012 Free Software Foundation, Inc.
++This config.status script is free software; the Free Software Foundation
++gives unlimited permission to copy, distribute and modify it."
++
++ac_pwd='$ac_pwd'
++srcdir='$srcdir'
++test -n "\$AWK" || AWK=awk
++_ACEOF
++
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++# The default lists apply if the user does not specify any file.
++ac_need_defaults=:
++while test $# != 0
++do
++ case $1 in
++ --*=?*)
++ ac_option=`expr "X$1" : 'X\([^=]*\)='`
++ ac_optarg=`expr "X$1" : 'X[^=]*=\(.*\)'`
++ ac_shift=:
++ ;;
++ --*=)
++ ac_option=`expr "X$1" : 'X\([^=]*\)='`
++ ac_optarg=
++ ac_shift=:
++ ;;
++ *)
++ ac_option=$1
++ ac_optarg=$2
++ ac_shift=shift
++ ;;
++ esac
++
++ case $ac_option in
++ # Handling of the options.
++ -recheck | --recheck | --rechec | --reche | --rech | --rec | --re | --r)
++ ac_cs_recheck=: ;;
++ --version | --versio | --versi | --vers | --ver | --ve | --v | -V )
++ $as_echo "$ac_cs_version"; exit ;;
++ --config | --confi | --conf | --con | --co | --c )
++ $as_echo "$ac_cs_config"; exit ;;
++ --debug | --debu | --deb | --de | --d | -d )
++ debug=: ;;
++ --file | --fil | --fi | --f )
++ $ac_shift
++ case $ac_optarg in
++ *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
++ '') as_fn_error $? "missing file argument" ;;
++ esac
++ as_fn_append CONFIG_FILES " '$ac_optarg'"
++ ac_need_defaults=false;;
++ --header | --heade | --head | --hea )
++ $ac_shift
++ case $ac_optarg in
++ *\'*) ac_optarg=`$as_echo "$ac_optarg" | sed "s/'/'\\\\\\\\''/g"` ;;
++ esac
++ as_fn_append CONFIG_HEADERS " '$ac_optarg'"
++ ac_need_defaults=false;;
++ --he | --h)
++ # Conflict between --help and --header
++ as_fn_error $? "ambiguous option: \`$1'
++Try \`$0 --help' for more information.";;
++ --help | --hel | -h )
++ $as_echo "$ac_cs_usage"; exit ;;
++ -q | -quiet | --quiet | --quie | --qui | --qu | --q \
++ | -silent | --silent | --silen | --sile | --sil | --si | --s)
++ ac_cs_silent=: ;;
++
++ # This is an error.
++ -*) as_fn_error $? "unrecognized option: \`$1'
++Try \`$0 --help' for more information." ;;
++
++ *) as_fn_append ac_config_targets " $1"
++ ac_need_defaults=false ;;
++
++ esac
++ shift
++done
++
++ac_configure_extra_args=
++
++if $ac_cs_silent; then
++ exec 6>/dev/null
++ ac_configure_extra_args="$ac_configure_extra_args --silent"
++fi
++
++_ACEOF
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++if \$ac_cs_recheck; then
++ set X $SHELL '$0' $ac_configure_args \$ac_configure_extra_args --no-create --no-recursion
++ shift
++ \$as_echo "running CONFIG_SHELL=$SHELL \$*" >&6
++ CONFIG_SHELL='$SHELL'
++ export CONFIG_SHELL
++ exec "\$@"
++fi
++
++_ACEOF
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++exec 5>>config.log
++{
++ echo
++ sed 'h;s/./-/g;s/^.../## /;s/...$/ ##/;p;x;p;x' <<_ASBOX
++## Running $as_me. ##
++_ASBOX
++ $as_echo "$ac_log"
++} >&5
++
++_ACEOF
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++_ACEOF
++
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++
++# Handling of arguments.
++for ac_config_target in $ac_config_targets
++do
++ case $ac_config_target in
++ "config.h") CONFIG_HEADERS="$CONFIG_HEADERS config.h" ;;
++ "config.mk") CONFIG_FILES="$CONFIG_FILES config.mk" ;;
++
++ *) as_fn_error $? "invalid argument: \`$ac_config_target'" "$LINENO" 5;;
++ esac
++done
++
++
++# If the user did not use the arguments to specify the items to instantiate,
++# then the envvar interface is used. Set only those that are not.
++# We use the long form for the default assignment because of an extremely
++# bizarre bug on SunOS 4.1.3.
++if $ac_need_defaults; then
++ test "${CONFIG_FILES+set}" = set || CONFIG_FILES=$config_files
++ test "${CONFIG_HEADERS+set}" = set || CONFIG_HEADERS=$config_headers
++fi
++
++# Have a temporary directory for convenience. Make it in the build tree
++# simply because there is no reason against having it here, and in addition,
++# creating and moving files from /tmp can sometimes cause problems.
++# Hook for its removal unless debugging.
++# Note that there is a small window in which the directory will not be cleaned:
++# after its creation but before its name has been assigned to `$tmp'.
++$debug ||
++{
++ tmp= ac_tmp=
++ trap 'exit_status=$?
++ : "${ac_tmp:=$tmp}"
++ { test ! -d "$ac_tmp" || rm -fr "$ac_tmp"; } && exit $exit_status
++' 0
++ trap 'as_fn_exit 1' 1 2 13 15
++}
++# Create a (secure) tmp directory for tmp files.
++
++{
++ tmp=`(umask 077 && mktemp -d "./confXXXXXX") 2>/dev/null` &&
++ test -d "$tmp"
++} ||
++{
++ tmp=./conf$$-$RANDOM
++ (umask 077 && mkdir "$tmp")
++} || as_fn_error $? "cannot create a temporary directory in ." "$LINENO" 5
++ac_tmp=$tmp
++
++# Set up the scripts for CONFIG_FILES section.
++# No need to generate them if there are no CONFIG_FILES.
++# This happens for instance with `./config.status config.h'.
++if test -n "$CONFIG_FILES"; then
++
++
++ac_cr=`echo X | tr X '\015'`
++# On cygwin, bash can eat \r inside `` if the user requested igncr.
++# But we know of no other shell where ac_cr would be empty at this
++# point, so we can use a bashism as a fallback.
++if test "x$ac_cr" = x; then
++ eval ac_cr=\$\'\\r\'
++fi
++ac_cs_awk_cr=`$AWK 'BEGIN { print "a\rb" }' </dev/null 2>/dev/null`
++if test "$ac_cs_awk_cr" = "a${ac_cr}b"; then
++ ac_cs_awk_cr='\\r'
++else
++ ac_cs_awk_cr=$ac_cr
++fi
++
++echo 'BEGIN {' >"$ac_tmp/subs1.awk" &&
++_ACEOF
++
++
++{
++ echo "cat >conf$$subs.awk <<_ACEOF" &&
++ echo "$ac_subst_vars" | sed 's/.*/&!$&$ac_delim/' &&
++ echo "_ACEOF"
++} >conf$$subs.sh ||
++ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
++ac_delim_num=`echo "$ac_subst_vars" | grep -c '^'`
++ac_delim='%!_!# '
++for ac_last_try in false false false false false :; do
++ . ./conf$$subs.sh ||
++ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
++
++ ac_delim_n=`sed -n "s/.*$ac_delim\$/X/p" conf$$subs.awk | grep -c X`
++ if test $ac_delim_n = $ac_delim_num; then
++ break
++ elif $ac_last_try; then
++ as_fn_error $? "could not make $CONFIG_STATUS" "$LINENO" 5
++ else
++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
++ fi
++done
++rm -f conf$$subs.sh
++
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++cat >>"\$ac_tmp/subs1.awk" <<\\_ACAWK &&
++_ACEOF
++sed -n '
++h
++s/^/S["/; s/!.*/"]=/
++p
++g
++s/^[^!]*!//
++:repl
++t repl
++s/'"$ac_delim"'$//
++t delim
++:nl
++h
++s/\(.\{148\}\)..*/\1/
++t more1
++s/["\\]/\\&/g; s/^/"/; s/$/\\n"\\/
++p
++n
++b repl
++:more1
++s/["\\]/\\&/g; s/^/"/; s/$/"\\/
++p
++g
++s/.\{148\}//
++t nl
++:delim
++h
++s/\(.\{148\}\)..*/\1/
++t more2
++s/["\\]/\\&/g; s/^/"/; s/$/"/
++p
++b
++:more2
++s/["\\]/\\&/g; s/^/"/; s/$/"\\/
++p
++g
++s/.\{148\}//
++t delim
++' <conf$$subs.awk | sed '
++/^[^""]/{
++ N
++ s/\n//
++}
++' >>$CONFIG_STATUS || ac_write_fail=1
++rm -f conf$$subs.awk
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++_ACAWK
++cat >>"\$ac_tmp/subs1.awk" <<_ACAWK &&
++ for (key in S) S_is_set[key] = 1
++ FS = ""
++
++}
++{
++ line = $ 0
++ nfields = split(line, field, "@")
++ substed = 0
++ len = length(field[1])
++ for (i = 2; i < nfields; i++) {
++ key = field[i]
++ keylen = length(key)
++ if (S_is_set[key]) {
++ value = S[key]
++ line = substr(line, 1, len) "" value "" substr(line, len + keylen + 3)
++ len += length(value) + length(field[++i])
++ substed = 1
++ } else
++ len += 1 + keylen
++ }
++
++ print line
++}
++
++_ACAWK
++_ACEOF
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++if sed "s/$ac_cr//" < /dev/null > /dev/null 2>&1; then
++ sed "s/$ac_cr\$//; s/$ac_cr/$ac_cs_awk_cr/g"
++else
++ cat
++fi < "$ac_tmp/subs1.awk" > "$ac_tmp/subs.awk" \
++ || as_fn_error $? "could not setup config files machinery" "$LINENO" 5
++_ACEOF
++
++# VPATH may cause trouble with some makes, so we remove sole $(srcdir),
++# ${srcdir} and @srcdir@ entries from VPATH if srcdir is ".", strip leading and
++# trailing colons and then remove the whole line if VPATH becomes empty
++# (actually we leave an empty line to preserve line numbers).
++if test "x$srcdir" = x.; then
++ ac_vpsub='/^[ ]*VPATH[ ]*=[ ]*/{
++h
++s///
++s/^/:/
++s/[ ]*$/:/
++s/:\$(srcdir):/:/g
++s/:\${srcdir}:/:/g
++s/:@srcdir@:/:/g
++s/^:*//
++s/:*$//
++x
++s/\(=[ ]*\).*/\1/
++G
++s/\n//
++s/^[^=]*=[ ]*$//
++}'
++fi
++
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++fi # test -n "$CONFIG_FILES"
++
++# Set up the scripts for CONFIG_HEADERS section.
++# No need to generate them if there are no CONFIG_HEADERS.
++# This happens for instance with `./config.status Makefile'.
++if test -n "$CONFIG_HEADERS"; then
++cat >"$ac_tmp/defines.awk" <<\_ACAWK ||
++BEGIN {
++_ACEOF
++
++# Transform confdefs.h into an awk script `defines.awk', embedded as
++# here-document in config.status, that substitutes the proper values into
++# config.h.in to produce config.h.
++
++# Create a delimiter string that does not exist in confdefs.h, to ease
++# handling of long lines.
++ac_delim='%!_!# '
++for ac_last_try in false false :; do
++ ac_tt=`sed -n "/$ac_delim/p" confdefs.h`
++ if test -z "$ac_tt"; then
++ break
++ elif $ac_last_try; then
++ as_fn_error $? "could not make $CONFIG_HEADERS" "$LINENO" 5
++ else
++ ac_delim="$ac_delim!$ac_delim _$ac_delim!! "
++ fi
++done
++
++# For the awk script, D is an array of macro values keyed by name,
++# likewise P contains macro parameters if any. Preserve backslash
++# newline sequences.
++
++ac_word_re=[_$as_cr_Letters][_$as_cr_alnum]*
++sed -n '
++s/.\{148\}/&'"$ac_delim"'/g
++t rset
++:rset
++s/^[ ]*#[ ]*define[ ][ ]*/ /
++t def
++d
++:def
++s/\\$//
++t bsnl
++s/["\\]/\\&/g
++s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\
++D["\1"]=" \3"/p
++s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2"/p
++d
++:bsnl
++s/["\\]/\\&/g
++s/^ \('"$ac_word_re"'\)\(([^()]*)\)[ ]*\(.*\)/P["\1"]="\2"\
++D["\1"]=" \3\\\\\\n"\\/p
++t cont
++s/^ \('"$ac_word_re"'\)[ ]*\(.*\)/D["\1"]=" \2\\\\\\n"\\/p
++t cont
++d
++:cont
++n
++s/.\{148\}/&'"$ac_delim"'/g
++t clear
++:clear
++s/\\$//
++t bsnlc
++s/["\\]/\\&/g; s/^/"/; s/$/"/p
++d
++:bsnlc
++s/["\\]/\\&/g; s/^/"/; s/$/\\\\\\n"\\/p
++b cont
++' <confdefs.h | sed '
++s/'"$ac_delim"'/"\\\
++"/g' >>$CONFIG_STATUS || ac_write_fail=1
++
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++ for (key in D) D_is_set[key] = 1
++ FS = ""
++}
++/^[\t ]*#[\t ]*(define|undef)[\t ]+$ac_word_re([\t (]|\$)/ {
++ line = \$ 0
++ split(line, arg, " ")
++ if (arg[1] == "#") {
++ defundef = arg[2]
++ mac1 = arg[3]
++ } else {
++ defundef = substr(arg[1], 2)
++ mac1 = arg[2]
++ }
++ split(mac1, mac2, "(") #)
++ macro = mac2[1]
++ prefix = substr(line, 1, index(line, defundef) - 1)
++ if (D_is_set[macro]) {
++ # Preserve the white space surrounding the "#".
++ print prefix "define", macro P[macro] D[macro]
++ next
++ } else {
++ # Replace #undef with comments. This is necessary, for example,
++ # in the case of _POSIX_SOURCE, which is predefined and required
++ # on some systems where configure will not decide to define it.
++ if (defundef == "undef") {
++ print "/*", prefix defundef, macro, "*/"
++ next
++ }
++ }
++}
++{ print }
++_ACAWK
++_ACEOF
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++ as_fn_error $? "could not setup config headers machinery" "$LINENO" 5
++fi # test -n "$CONFIG_HEADERS"
++
++
++eval set X " :F $CONFIG_FILES :H $CONFIG_HEADERS "
++shift
++for ac_tag
++do
++ case $ac_tag in
++ :[FHLC]) ac_mode=$ac_tag; continue;;
++ esac
++ case $ac_mode$ac_tag in
++ :[FHL]*:*);;
++ :L* | :C*:*) as_fn_error $? "invalid tag \`$ac_tag'" "$LINENO" 5;;
++ :[FH]-) ac_tag=-:-;;
++ :[FH]*) ac_tag=$ac_tag:$ac_tag.in;;
++ esac
++ ac_save_IFS=$IFS
++ IFS=:
++ set x $ac_tag
++ IFS=$ac_save_IFS
++ shift
++ ac_file=$1
++ shift
++
++ case $ac_mode in
++ :L) ac_source=$1;;
++ :[FH])
++ ac_file_inputs=
++ for ac_f
++ do
++ case $ac_f in
++ -) ac_f="$ac_tmp/stdin";;
++ *) # Look for the file first in the build tree, then in the source tree
++ # (if the path is not absolute). The absolute path cannot be DOS-style,
++ # because $ac_f cannot contain `:'.
++ test -f "$ac_f" ||
++ case $ac_f in
++ [\\/$]*) false;;
++ *) test -f "$srcdir/$ac_f" && ac_f="$srcdir/$ac_f";;
++ esac ||
++ as_fn_error 1 "cannot find input file: \`$ac_f'" "$LINENO" 5;;
++ esac
++ case $ac_f in *\'*) ac_f=`$as_echo "$ac_f" | sed "s/'/'\\\\\\\\''/g"`;; esac
++ as_fn_append ac_file_inputs " '$ac_f'"
++ done
++
++ # Let's still pretend it is `configure' which instantiates (i.e., don't
++ # use $as_me), people would be surprised to read:
++ # /* config.h. Generated by config.status. */
++ configure_input='Generated from '`
++ $as_echo "$*" | sed 's|^[^:]*/||;s|:[^:]*/|, |g'
++ `' by configure.'
++ if test x"$ac_file" != x-; then
++ configure_input="$ac_file. $configure_input"
++ { $as_echo "$as_me:${as_lineno-$LINENO}: creating $ac_file" >&5
++$as_echo "$as_me: creating $ac_file" >&6;}
++ fi
++ # Neutralize special characters interpreted by sed in replacement strings.
++ case $configure_input in #(
++ *\&* | *\|* | *\\* )
++ ac_sed_conf_input=`$as_echo "$configure_input" |
++ sed 's/[\\\\&|]/\\\\&/g'`;; #(
++ *) ac_sed_conf_input=$configure_input;;
++ esac
++
++ case $ac_tag in
++ *:-:* | *:-) cat >"$ac_tmp/stdin" \
++ || as_fn_error $? "could not create $ac_file" "$LINENO" 5 ;;
++ esac
++ ;;
++ esac
++
++ ac_dir=`$as_dirname -- "$ac_file" ||
++$as_expr X"$ac_file" : 'X\(.*[^/]\)//*[^/][^/]*/*$' \| \
++ X"$ac_file" : 'X\(//\)[^/]' \| \
++ X"$ac_file" : 'X\(//\)$' \| \
++ X"$ac_file" : 'X\(/\)' \| . 2>/dev/null ||
++$as_echo X"$ac_file" |
++ sed '/^X\(.*[^/]\)\/\/*[^/][^/]*\/*$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)[^/].*/{
++ s//\1/
++ q
++ }
++ /^X\(\/\/\)$/{
++ s//\1/
++ q
++ }
++ /^X\(\/\).*/{
++ s//\1/
++ q
++ }
++ s/.*/./; q'`
++ as_dir="$ac_dir"; as_fn_mkdir_p
++ ac_builddir=.
++
++case "$ac_dir" in
++.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
++*)
++ ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
++ # A ".." for each directory in $ac_dir_suffix.
++ ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
++ case $ac_top_builddir_sub in
++ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
++ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
++ esac ;;
++esac
++ac_abs_top_builddir=$ac_pwd
++ac_abs_builddir=$ac_pwd$ac_dir_suffix
++# for backward compatibility:
++ac_top_builddir=$ac_top_build_prefix
++
++case $srcdir in
++ .) # We are building in place.
++ ac_srcdir=.
++ ac_top_srcdir=$ac_top_builddir_sub
++ ac_abs_top_srcdir=$ac_pwd ;;
++ [\\/]* | ?:[\\/]* ) # Absolute name.
++ ac_srcdir=$srcdir$ac_dir_suffix;
++ ac_top_srcdir=$srcdir
++ ac_abs_top_srcdir=$srcdir ;;
++ *) # Relative name.
++ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
++ ac_top_srcdir=$ac_top_build_prefix$srcdir
++ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
++esac
++ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
++
++
++ case $ac_mode in
++ :F)
++ #
++ # CONFIG_FILE
++ #
++
++_ACEOF
++
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++# If the template does not know about datarootdir, expand it.
++# FIXME: This hack should be removed a few years after 2.60.
++ac_datarootdir_hack=; ac_datarootdir_seen=
++ac_sed_dataroot='
++/datarootdir/ {
++ p
++ q
++}
++/@datadir@/p
++/@docdir@/p
++/@infodir@/p
++/@localedir@/p
++/@mandir@/p'
++case `eval "sed -n \"\$ac_sed_dataroot\" $ac_file_inputs"` in
++*datarootdir*) ac_datarootdir_seen=yes;;
++*@datadir@*|*@docdir@*|*@infodir@*|*@localedir@*|*@mandir@*)
++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&5
++$as_echo "$as_me: WARNING: $ac_file_inputs seems to ignore the --datarootdir setting" >&2;}
++_ACEOF
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++ ac_datarootdir_hack='
++ s&@datadir@&$datadir&g
++ s&@docdir@&$docdir&g
++ s&@infodir@&$infodir&g
++ s&@localedir@&$localedir&g
++ s&@mandir@&$mandir&g
++ s&\\\${datarootdir}&$datarootdir&g' ;;
++esac
++_ACEOF
++
++# Neutralize VPATH when `$srcdir' = `.'.
++# Shell code in configure.ac might set extrasub.
++# FIXME: do we really want to maintain this feature?
++cat >>$CONFIG_STATUS <<_ACEOF || ac_write_fail=1
++ac_sed_extra="$ac_vpsub
++$extrasub
++_ACEOF
++cat >>$CONFIG_STATUS <<\_ACEOF || ac_write_fail=1
++:t
++/@[a-zA-Z_][a-zA-Z_0-9]*@/!b
++s|@configure_input@|$ac_sed_conf_input|;t t
++s&@top_builddir@&$ac_top_builddir_sub&;t t
++s&@top_build_prefix@&$ac_top_build_prefix&;t t
++s&@srcdir@&$ac_srcdir&;t t
++s&@abs_srcdir@&$ac_abs_srcdir&;t t
++s&@top_srcdir@&$ac_top_srcdir&;t t
++s&@abs_top_srcdir@&$ac_abs_top_srcdir&;t t
++s&@builddir@&$ac_builddir&;t t
++s&@abs_builddir@&$ac_abs_builddir&;t t
++s&@abs_top_builddir@&$ac_abs_top_builddir&;t t
++$ac_datarootdir_hack
++"
++eval sed \"\$ac_sed_extra\" "$ac_file_inputs" | $AWK -f "$ac_tmp/subs.awk" \
++ >$ac_tmp/out || as_fn_error $? "could not create $ac_file" "$LINENO" 5
++
++test -z "$ac_datarootdir_hack$ac_datarootdir_seen" &&
++ { ac_out=`sed -n '/\${datarootdir}/p' "$ac_tmp/out"`; test -n "$ac_out"; } &&
++ { ac_out=`sed -n '/^[ ]*datarootdir[ ]*:*=/p' \
++ "$ac_tmp/out"`; test -z "$ac_out"; } &&
++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: $ac_file contains a reference to the variable \`datarootdir'
++which seems to be undefined. Please make sure it is defined" >&5
++$as_echo "$as_me: WARNING: $ac_file contains a reference to the variable \`datarootdir'
++which seems to be undefined. Please make sure it is defined" >&2;}
++
++ rm -f "$ac_tmp/stdin"
++ case $ac_file in
++ -) cat "$ac_tmp/out" && rm -f "$ac_tmp/out";;
++ *) rm -f "$ac_file" && mv "$ac_tmp/out" "$ac_file";;
++ esac \
++ || as_fn_error $? "could not create $ac_file" "$LINENO" 5
++ ;;
++ :H)
++ #
++ # CONFIG_HEADER
++ #
++ if test x"$ac_file" != x-; then
++ {
++ $as_echo "/* $configure_input */" \
++ && eval '$AWK -f "$ac_tmp/defines.awk"' "$ac_file_inputs"
++ } >"$ac_tmp/config.h" \
++ || as_fn_error $? "could not create $ac_file" "$LINENO" 5
++ if diff "$ac_file" "$ac_tmp/config.h" >/dev/null 2>&1; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: $ac_file is unchanged" >&5
++$as_echo "$as_me: $ac_file is unchanged" >&6;}
++ else
++ rm -f "$ac_file"
++ mv "$ac_tmp/config.h" "$ac_file" \
++ || as_fn_error $? "could not create $ac_file" "$LINENO" 5
++ fi
++ else
++ $as_echo "/* $configure_input */" \
++ && eval '$AWK -f "$ac_tmp/defines.awk"' "$ac_file_inputs" \
++ || as_fn_error $? "could not create -" "$LINENO" 5
++ fi
++ ;;
++
++
++ esac
++
++done # for ac_tag
++
++
++as_fn_exit 0
++_ACEOF
++ac_clean_files=$ac_clean_files_save
++
++test $ac_write_fail = 0 ||
++ as_fn_error $? "write failure creating $CONFIG_STATUS" "$LINENO" 5
++
++
++# configure is writing to config.log, and then calls config.status.
++# config.status does its own redirection, appending to config.log.
++# Unfortunately, on DOS this fails, as config.log is still kept open
++# by configure, so config.status won't be able to write to it; its
++# output is simply discarded. So we exec the FD to /dev/null,
++# effectively closing config.log, so it can be properly (re)opened and
++# appended to by config.status. When coming back to configure, we
++# need to make the FD available again.
++if test "$no_create" != yes; then
++ ac_cs_success=:
++ ac_config_status_args=
++ test "$silent" = yes &&
++ ac_config_status_args="$ac_config_status_args --quiet"
++ exec 5>/dev/null
++ $SHELL $CONFIG_STATUS $ac_config_status_args || ac_cs_success=false
++ exec 5>>config.log
++ # Use ||, not &&, to avoid exiting from the if with $? = 1, which
++ # would make configure fail if this is the last instruction.
++ $ac_cs_success || as_fn_exit 1
++fi
++
++#
++# CONFIG_SUBDIRS section.
++#
++if test "$no_recursion" != yes; then
++
++ # Remove --cache-file, --srcdir, and --disable-option-checking arguments
++ # so they do not pile up.
++ ac_sub_configure_args=
++ ac_prev=
++ eval "set x $ac_configure_args"
++ shift
++ for ac_arg
++ do
++ if test -n "$ac_prev"; then
++ ac_prev=
++ continue
++ fi
++ case $ac_arg in
++ -cache-file | --cache-file | --cache-fil | --cache-fi \
++ | --cache-f | --cache- | --cache | --cach | --cac | --ca | --c)
++ ac_prev=cache_file ;;
++ -cache-file=* | --cache-file=* | --cache-fil=* | --cache-fi=* \
++ | --cache-f=* | --cache-=* | --cache=* | --cach=* | --cac=* | --ca=* \
++ | --c=*)
++ ;;
++ --config-cache | -C)
++ ;;
++ -srcdir | --srcdir | --srcdi | --srcd | --src | --sr)
++ ac_prev=srcdir ;;
++ -srcdir=* | --srcdir=* | --srcdi=* | --srcd=* | --src=* | --sr=*)
++ ;;
++ -prefix | --prefix | --prefi | --pref | --pre | --pr | --p)
++ ac_prev=prefix ;;
++ -prefix=* | --prefix=* | --prefi=* | --pref=* | --pre=* | --pr=* | --p=*)
++ ;;
++ --disable-option-checking)
++ ;;
++ *)
++ case $ac_arg in
++ *\'*) ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
++ esac
++ as_fn_append ac_sub_configure_args " '$ac_arg'" ;;
++ esac
++ done
++
++ # Always prepend --prefix to ensure using the same prefix
++ # in subdir configurations.
++ ac_arg="--prefix=$prefix"
++ case $ac_arg in
++ *\'*) ac_arg=`$as_echo "$ac_arg" | sed "s/'/'\\\\\\\\''/g"` ;;
++ esac
++ ac_sub_configure_args="'$ac_arg' $ac_sub_configure_args"
++
++ # Pass --silent
++ if test "$silent" = yes; then
++ ac_sub_configure_args="--silent $ac_sub_configure_args"
++ fi
++
++ # Always prepend --disable-option-checking to silence warnings, since
++ # different subdirs can have different --enable and --with options.
++ ac_sub_configure_args="--disable-option-checking $ac_sub_configure_args"
++
++ ac_popdir=`pwd`
++ for ac_dir in : $subdirs; do test "x$ac_dir" = x: && continue
++
++ # Do not complain, so a configure script can configure whichever
++ # parts of a large source tree are present.
++ test -d "$srcdir/$ac_dir" || continue
++
++ ac_msg="=== configuring in $ac_dir (`pwd`/$ac_dir)"
++ $as_echo "$as_me:${as_lineno-$LINENO}: $ac_msg" >&5
++ $as_echo "$ac_msg" >&6
++ as_dir="$ac_dir"; as_fn_mkdir_p
++ ac_builddir=.
++
++case "$ac_dir" in
++.) ac_dir_suffix= ac_top_builddir_sub=. ac_top_build_prefix= ;;
++*)
++ ac_dir_suffix=/`$as_echo "$ac_dir" | sed 's|^\.[\\/]||'`
++ # A ".." for each directory in $ac_dir_suffix.
++ ac_top_builddir_sub=`$as_echo "$ac_dir_suffix" | sed 's|/[^\\/]*|/..|g;s|/||'`
++ case $ac_top_builddir_sub in
++ "") ac_top_builddir_sub=. ac_top_build_prefix= ;;
++ *) ac_top_build_prefix=$ac_top_builddir_sub/ ;;
++ esac ;;
++esac
++ac_abs_top_builddir=$ac_pwd
++ac_abs_builddir=$ac_pwd$ac_dir_suffix
++# for backward compatibility:
++ac_top_builddir=$ac_top_build_prefix
++
++case $srcdir in
++ .) # We are building in place.
++ ac_srcdir=.
++ ac_top_srcdir=$ac_top_builddir_sub
++ ac_abs_top_srcdir=$ac_pwd ;;
++ [\\/]* | ?:[\\/]* ) # Absolute name.
++ ac_srcdir=$srcdir$ac_dir_suffix;
++ ac_top_srcdir=$srcdir
++ ac_abs_top_srcdir=$srcdir ;;
++ *) # Relative name.
++ ac_srcdir=$ac_top_build_prefix$srcdir$ac_dir_suffix
++ ac_top_srcdir=$ac_top_build_prefix$srcdir
++ ac_abs_top_srcdir=$ac_pwd/$srcdir ;;
++esac
++ac_abs_srcdir=$ac_abs_top_srcdir$ac_dir_suffix
++
++
++ cd "$ac_dir"
++
++ # Check for guested configure; otherwise get Cygnus style configure.
++ if test -f "$ac_srcdir/configure.gnu"; then
++ ac_sub_configure=$ac_srcdir/configure.gnu
++ elif test -f "$ac_srcdir/configure"; then
++ ac_sub_configure=$ac_srcdir/configure
++ elif test -f "$ac_srcdir/configure.in"; then
++ # This should be Cygnus configure.
++ ac_sub_configure=$ac_aux_dir/configure
++ else
++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: no configuration information is in $ac_dir" >&5
++$as_echo "$as_me: WARNING: no configuration information is in $ac_dir" >&2;}
++ ac_sub_configure=
++ fi
++
++ # The recursion is here.
++ if test -n "$ac_sub_configure"; then
++ # Make the cache file name correct relative to the subdirectory.
++ case $cache_file in
++ [\\/]* | ?:[\\/]* ) ac_sub_cache_file=$cache_file ;;
++ *) # Relative name.
++ ac_sub_cache_file=$ac_top_build_prefix$cache_file ;;
++ esac
++
++ { $as_echo "$as_me:${as_lineno-$LINENO}: running $SHELL $ac_sub_configure $ac_sub_configure_args --cache-file=$ac_sub_cache_file --srcdir=$ac_srcdir" >&5
++$as_echo "$as_me: running $SHELL $ac_sub_configure $ac_sub_configure_args --cache-file=$ac_sub_cache_file --srcdir=$ac_srcdir" >&6;}
++ # The eval makes quoting arguments work.
++ eval "\$SHELL \"\$ac_sub_configure\" $ac_sub_configure_args \
++ --cache-file=\"\$ac_sub_cache_file\" --srcdir=\"\$ac_srcdir\"" ||
++ as_fn_error $? "$ac_sub_configure failed for $ac_dir" "$LINENO" 5
++ fi
++
++ cd "$ac_popdir"
++ done
++fi
++if test -n "$ac_unrecognized_opts" && test "$enable_option_checking" != no; then
++ { $as_echo "$as_me:${as_lineno-$LINENO}: WARNING: unrecognized options: $ac_unrecognized_opts" >&5
++$as_echo "$as_me: WARNING: unrecognized options: $ac_unrecognized_opts" >&2;}
++fi
++
diff --git a/debian/patches/series b/debian/patches/series
index dc6d392..a6980ef 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -2,3 +2,4 @@ spelling.patch
literal_version.patch
mayhem.patch
fix-test.patch
+debian-changes
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/samtools.git
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