[med-svn] [python-gffutils] 01/01: initial debianization

[Michael Crusoe]

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misterc-guest pushed a commit to branch master
in repository python-gffutils.

commit e7bd118296061e727db6b56fb9fba9edaf864196
Author: Michael R. Crusoe <michael.crusoe at gmail.com>
Date:   Sun Jan 15 06:54:30 2017 -0800

    initial debianization
---
 debian/changelog               |  5 +++++
 debian/compat                  |  1 +
 debian/control                 | 34 ++++++++++++++++++++++++++++++++++
 debian/copyright               | 30 ++++++++++++++++++++++++++++++
 debian/rules                   |  9 +++++++++
 debian/source/format           |  1 +
 debian/source/include-binaries |  1 +
 debian/watch                   |  3 +++
 8 files changed, 84 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..7649a40
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+python-gffutils (0.8.7.1-1) UNRELEASED; urgency=medium
+
+  * Initial release. (Closes: #851488)
+
+ -- Michael R. Crusoe <michael.crusoe at gmail.com>  Sun, 15 Jan 2017 06:54:17 -0800
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..f599e28
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+10
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..6f7b007
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,34 @@
+Source: python-gffutils
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Michael R. Crusoe <michael.crusoe at gmail.com>
+Section: python
+Priority: optional
+Build-Depends: debhelper (>= 10),
+               dh-python,
+               bedtools,
+               python3,
+               python3-all,
+               python3-setuptools,
+               python3-simplejson,
+               python3-six,
+               python3-argcomplete,
+               python3-argh,
+               python3-pyfaidx,
+               python3-nose,
+               python3-biopython,
+               python3-pybedtools
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/python-gffutils.git
+Vcs-Git: https://anonscm.debian.org/git/debian-med/python-gffutils.git
+Homepage: https://daler.github.io/gffutils
+
+Package: python3-gffutils
+Architecture: all
+Depends: ${python3:Depends},
+         ${misc:Depends}
+Description: Work with GFF and GTF files in a flexible database framework
+ A Python package for working with and manipulating the GFF and GTF format
+ files typically used for genomic annotations.  Files are loaded into a
+ sqlite3 database, allowing much more complex manipulation of hierarchical
+ features (e.g., genes, transcripts, and exons) than is possible with
+ plain-text methods alone.
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..0c84698
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,30 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: gffutils
+Source: https://pypi.python.org/pypi/gffutils
+
+Files: *
+Copyright: 2013 Ryan Dale
+License: MIT
+
+Files: debian/*
+Copyright: © 2017 Michael R. Crusoe <michael.crusoe at gmail.com>
+License: MIT
+
+License: MIT
+ Permission is hereby granted, free of charge, to any person obtaining a copy of
+ this software and associated documentation files (the "Software"), to deal in
+ the Software without restriction, including without limitation the rights to
+ use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies
+ of the Software, and to permit persons to whom the Software is furnished to do
+ so, subject to the following conditions:
+ .
+ The above copyright notice and this permission notice shall be included in all
+ copies or substantial portions of the Software.
+ .
+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+ SOFTWARE.
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..1fed0ae
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,9 @@
+#!/usr/bin/make -f
+
+DH_VERBOSE := 1
+
+export PYBUILD_NAME=gffutils
+export PYBUILD_DISABLE=test  # https://github.com/daler/gffutils/issues/91
+
+%:
+	dh $@ --with python3 --buildsystem=pybuild
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/source/include-binaries b/debian/source/include-binaries
new file mode 100644
index 0000000..1548f5c
--- /dev/null
+++ b/debian/source/include-binaries
@@ -0,0 +1 @@
+debian/mpl-expected.png
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..684c124
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,3 @@
+version=3
+opts=uversionmangle=s/(rc|a|b|c)/~$1/ \
+https://pypi.debian.net/gffutils/gffutils-(.+)\.(?:zip|tgz|tbz|txz|(?:tar\.(?:gz|bz2|xz)))

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