[med-svn] [freecontact] 01/01: Cleaned annotation - metadata and newly edam

[Steffen Möller]

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moeller pushed a commit to branch master
in repository freecontact.

commit 9c9ab9e6405a9aa3c8372162086075980285ed46
Author: Steffen Moeller <moeller at debian.org>
Date:   Mon Jan 16 17:30:08 2017 +0100

    Cleaned annotation - metadata and newly edam
---
 debian/upstream/edam     | 17 +++++++++++++++++
 debian/upstream/metadata | 24 ------------------------
 2 files changed, 17 insertions(+), 24 deletions(-)

diff --git a/debian/upstream/edam b/debian/upstream/edam
new file mode 100644
index 0000000..5b5749a
--- /dev/null
+++ b/debian/upstream/edam
@@ -0,0 +1,17 @@
+---
+ontology: EDAM (1.16)
+topics:
+  - Structure prediction
+  - Sequence analysis
+scopes:
+  - name: summary
+    function:
+      - Residue interaction prediction
+    inputs:
+      - data: Sequence alignment (protein)
+        format: A2M
+    outputs:
+      - data: Protein contact map
+        format:
+          - BioXSD
+          - Textual format
diff --git a/debian/upstream/metadata b/debian/upstream/metadata
index 23f2864..5ad21cc 100644
--- a/debian/upstream/metadata
+++ b/debian/upstream/metadata
@@ -10,28 +10,4 @@ Reference:
 # lkajan: I used the EDAM ontology [1] for the terms below. I browsed it on-line at [2].
 # lkajan: [1] http://edamontology.org/EDAM.owl
 # lkajan: [2] http://bioportal.bioontology.org/ontologies/49579?p=terms
-Software:
- - Name: freecontact
-   Topic:
-     - Protein structure prediction: http://edamontology.org/topic_0172
-     - Protein sequence analysis: http://edamontology.org/topic_0639
-   Function:
-     - Residue interaction prediction: http://edamontology.org/operation_0272
-   Input:
-     Data:
-       - Sequence alignment (protein): http://edamontology.org/data_1384
-     Format:
-       - A2M
-   Output:
-     Data:
-       - Protein contact map: http://edamontology.org/data_1547
-     Format:
-       - BioXSD: 'http://edamontology.org/format_2352'
-       - PFRMAT RR
-   # lkajan: Interface terms are from the Software Ontology <http://theswo.sourceforge.net/>.
-   # lkajan: http://bioportal.bioontology.org/ontologies/50167?p=terms
-   # lkajan: http://theswo.svn.sourceforge.net/viewvc/theswo/trunk/src/release/swoinowl/inferredswo/swo_inferred.owl
-   Interface:
-     - Command Line Interface: http://www.ebi.ac.uk/swo/interface/SWO_9000053
-
 # vim:et:ts=2:ai:syntax=yaml:

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