[med-svn] [fastaq] 01/01: Corrected EDAM annotation file

[Steffen Möller]

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moeller pushed a commit to branch master
in repository fastaq.

commit 3ec1af0de014ee5cce370afc4a98967b89438aee
Author: Steffen Moeller <moeller at debian.org>
Date:   Mon Jan 16 17:55:57 2017 +0100

    Corrected EDAM annotation file
---
 debian/upstream/edam | 26 +++++++++++---------------
 1 file changed, 11 insertions(+), 15 deletions(-)

diff --git a/debian/upstream/edam b/debian/upstream/edam
index b0c3b93..8868ab5 100644
--- a/debian/upstream/edam
+++ b/debian/upstream/edam
@@ -5,7 +5,7 @@ topic:
 scopes:
   - name: add_indels
     function:
-      - Sequence mutation and randomization
+      - Sequence mutation and randomisation
     inputs:
       - data: Sequence
         formats: [FASTA, FASTQ]
@@ -41,7 +41,7 @@ scopes:
         formats: [FASTA, FASTQ]
   - name: count_sequences
     function:
-      - File handling
+      - Data handling
     inputs:
       - data: Sequence
         formats: [FASTA, FASTQ]
@@ -56,7 +56,7 @@ scopes:
         formats: [FASTA]
     outputs:
       - data: Sequence
-        formats: FASTA
+        formats: [FASTA]
   - name: enumerate_names
     function:
       - Sequence file editing
@@ -133,7 +133,7 @@ scopes:
       - Random sequence generation
     outputs:
       - data: Sequence
-        formats: FASTQ
+        formats: [FASTQ]
   - name: merge
     function:
       - Aggregation
@@ -242,13 +242,10 @@ scopes:
       - Generation
     inputs:
       - data: Sequence
-        formats:
-          - FASTA
-          - FASTQ
+        formats: [FASTA, FASTQ]
     outputs:
       - data: Sequence
-        formats:
-          - qual
+        formats: [qual]
   - name: to_fasta
     function:
       - Formatting
@@ -259,12 +256,11 @@ scopes:
           - FASTQ
           - GFF3-seq
           - EMBL format
-          - GenBank forat
+          - GenBank format
           - PHYLIP format
     outputs:
       - data: Sequence
-        formats:
-          - FASTA
+        formats: [FASTA]
   - name: to_mira_xml
     function:
       - Generation
@@ -309,13 +305,13 @@ scopes:
         formats: [FASTA, FASTQ]
     outputs:
       - data: Sequence
-        formats: FASTQ
+        formats: [FASTQ]
   - name: to_tiling_bam
     function:
       - Generation
     inputs:
       - data: Sequence
-        formats: FASTA
+        formats: [FASTA]
     outputs:
       - data: Alignment
         formats: [BAM]
@@ -327,7 +323,7 @@ scopes:
         formats: [FASTA, FASTQ]
     outputs:
       - data: Sequence
-        formats: FASTA
+        formats: [FASTA]
   - name: trim_Ns_at_end
     function:
       - Sequence trimming

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