[med-svn] [gbrowse] 09/12: Fix manpage synopsises and spelling

[Andreas Tille]

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tille pushed a commit to branch master
in repository gbrowse.

commit b66a6d45f8994a3a84a2d0aa226cdf4cffafd015
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jan 18 16:07:31 2017 +0100

    Fix manpage synopsises and spelling
---
 debian/changelog                      |  1 +
 debian/gbrowse_set_admin_passwd.1     |  2 +-
 debian/patches/fix_whatis_entry.patch | 26 ++++++++++++++++
 debian/patches/series                 |  2 ++
 debian/patches/spelling.patch         | 58 +++++++++++++++++++++++++++++++++++
 5 files changed, 88 insertions(+), 1 deletion(-)

diff --git a/debian/changelog b/debian/changelog
index 0dea37a..bd4830b 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -20,6 +20,7 @@ gbrowse (2.56+dfsg-1) UNRELEASED; urgency=medium
   * Add $remote_fs to required-start
   * Add missing Depends: lsb-base (>= 3.0-6)
   * Fix runlevel of initscript
+  * Fix manpage synopsises and spelling
 
  -- Andreas Tille <tille at debian.org>  Wed, 18 Jan 2017 14:42:04 +0100
 
diff --git a/debian/gbrowse_set_admin_passwd.1 b/debian/gbrowse_set_admin_passwd.1
index 5ddc881..4783ef6 100644
--- a/debian/gbrowse_set_admin_passwd.1
+++ b/debian/gbrowse_set_admin_passwd.1
@@ -1,6 +1,6 @@
 .TH GBrowse2 1  "February 07, 2011" "version 1.1.0" "USER COMMANDS"
 .SH NAME
-gbrowse_setadmin_passwd \- Sets the adminstrator password for the GBrowse admin
+gbrowse_setadmin_passwd \- Sets the administrator password for the GBrowse admin
 .SH SYNOPSIS
 .B gbrowse_create_account [-pass password -name user]
 .I user Admin user name (default, admin)
diff --git a/debian/patches/fix_whatis_entry.patch b/debian/patches/fix_whatis_entry.patch
new file mode 100644
index 0000000..5fc7408
--- /dev/null
+++ b/debian/patches/fix_whatis_entry.patch
@@ -0,0 +1,26 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 18 Jan 2017 14:42:04 +0100
+Description: Fix whatis entries in manpages
+
+--- a/bin/gbrowse_aws_balancer.pl
++++ b/bin/gbrowse_aws_balancer.pl
+@@ -2,7 +2,7 @@
+ 
+ =head1 NAME
+ 
+-gbrowse_aws_balancer.pl  Load balance GBrowse using Amazon Web Service instances
++gbrowse_aws_balancer.pl - Load balance GBrowse using Amazon Web Service instances
+ 
+ =head1 SYNOPSIS
+ 
+--- a/bin/gbrowse_sync_aws_slave.pl
++++ b/bin/gbrowse_sync_aws_slave.pl
+@@ -2,7 +2,7 @@
+ 
+ =head1 NAME
+ 
+-gbrowse_sync_aws_slave.pl  Synchronize local file system to GBrowse slave volume.
++gbrowse_sync_aws_slave.pl - Synchronize local file system to GBrowse slave volume.
+ 
+ =head1 SYNOPSIS
+ 
diff --git a/debian/patches/series b/debian/patches/series
index 780cd5c..d840f87 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -6,3 +6,5 @@ skip_check_installed_test.patch
 source_init_functions
 init_script_dependency.patch
 fix_runlevel.patch
+spelling.patch
+fix_whatis_entry.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
new file mode 100644
index 0000000..198c859
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,58 @@
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Wed, 18 Jan 2017 14:42:04 +0100
+Description: Fix spelling
+
+--- a/bin/gtf2gff3.pl
++++ b/bin/gtf2gff3.pl
+@@ -1443,8 +1443,8 @@ author for support.
+ 
+ =item C<< FATAL: Invalid feature set: process_start >>
+ 
+-We tried to consider all possible ways of infering a start codon or
+-infering a a non-coding gene, and yet we've failed.  Your combination
++We tried to consider all possible ways of inferring a start codon or
++inferring a a non-coding gene, and yet we've failed.  Your combination
+ of gene features doesn't make sense to us.  You should never get
+ this error, and if you do, we'd really like to see the GTF file that
+ generated it.  Please contact the author for support.
+@@ -1463,15 +1463,15 @@ author for support.
+ 
+ =item C<< FATAL: Invalid feature set: process_stop >>
+ 
+-We tried to consider all possible ways of infering a stop codon or
+-infering a a non-coding gene, and yet we've failed.  Your combination
++We tried to consider all possible ways of inferring a stop codon or
++inferring a a non-coding gene, and yet we've failed.  Your combination
+ of gene features doesn't make sense to us.  You should never get
+ this error, and if you do, we'd really like to see the GTF file that
+ generated it.  Please contact the author for support.
+ 
+ =item C<< FATAL: Invalid feature set: process_exon_CDS_UTR >>
+ 
+-We tried to consider all possible ways of infering exons, CDSs and
++We tried to consider all possible ways of inferring exons, CDSs and
+ UTRs and yet we've failed.  Your combination of gene features doesn't
+ make sense to us.  You really should ever get this error, and if you
+ do, we'd really like to see the GTF file that generated it.  Please
+--- a/docs/pod/PLUGINS_HOWTO.pod
++++ b/docs/pod/PLUGINS_HOWTO.pod
+@@ -290,7 +290,7 @@ be stored in the hash returned by config
+ This method returns the path to the directory in which gbrowse
+ stores its configuration files. This is very useful for storing
+ plugin-specific configuration files. See the sourcecode of
+-RestrictionAnnotator for an exmaple of this.
++RestrictionAnnotator for an example of this.
+ 
+ =back
+ 
+--- a/lib/Bio/Graphics/Browser2/Plugin.pm
++++ b/lib/Bio/Graphics/Browser2/Plugin.pm
+@@ -401,7 +401,7 @@ that are not passed a segment object.
+ This method returns the path to the directory in which gbrowse stores
+ its configuration files.  This is very useful for storing
+ plugin-specific configuration files.  See the sourcecode of
+-RestrictionAnnotator for an exmaple of this.
++RestrictionAnnotator for an example of this.
+ 
+ =item $feature_file  = $self->new_feature_file
+ 

-- 
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