[med-svn] [iqtree] 02/06: Merge tag 'upstream/1.5.3+dfsg'

[Andreas Tille]

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tille pushed a commit to branch master
in repository iqtree.

commit 6a1f154d50fb58c7b7ad08932de3f90e7391a345
Merge: 5bb8dce 173db0c
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jan 19 08:31:19 2017 +0100

    Merge tag 'upstream/1.5.3+dfsg'
    
    Upstream version 1.5.3+dfsg

 CMakeLists.txt         |   2 +-
 alignment.cpp          |  52 ++++++++++++++++++++-----
 iqtree.cpp             |  16 ++++----
 model/modelfactory.cpp | 104 ++++++++++++++++++++++++++++++-------------------
 model/modelfactory.h   |   5 +--
 model/modelset.cpp     |  10 +++++
 model/ratefree.cpp     |   2 +-
 phyloanalysis.cpp      |  10 +++--
 phylokernelnew.h       |  45 +++++++++++----------
 phylotree.cpp          |   4 +-
 phylotreesse.cpp       |  35 +++++++++++++++--
 tools.cpp              |   3 ++
 12 files changed, 197 insertions(+), 91 deletions(-)

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