[med-svn] [perm] 01/03: Fix spelling

[Andreas Tille]

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tille pushed a commit to branch master
in repository perm.

commit 584ab71ac0914720254d04a3ed4d072035611cb9
Author: Andreas Tille <tille at debian.org>
Date:   Thu Jan 19 16:28:47 2017 +0100

    Fix spelling
---
 debian/changelog              |  1 +
 debian/patches/series         |  1 +
 debian/patches/spelling.patch | 15 +++++++++++++++
 3 files changed, 17 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 95294da..08b500f 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -9,6 +9,7 @@ perm (0.4.0-2) UNRELEASED; urgency=medium
   * Update d/copyright
   * fake watch file
   * debhelper 10
+  * Fix spelling
 
  -- Andreas Tille <tille at debian.org>  Thu, 19 Jan 2017 16:04:27 +0100
 
diff --git a/debian/patches/series b/debian/patches/series
index 7526845..801a8a3 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1,2 +1,3 @@
 make_dynamic_executable.patch
 hardening.patch
+spelling.patch
diff --git a/debian/patches/spelling.patch b/debian/patches/spelling.patch
new file mode 100644
index 0000000..138fcac
--- /dev/null
+++ b/debian/patches/spelling.patch
@@ -0,0 +1,15 @@
+Description: Fix spelling
+Author: Andreas Tille <tille at debian.org>
+Last-Update: Thu, 19 Jan 2017 16:04:27 +0100
+
+--- a/ParameterList.cpp
++++ b/ParameterList.cpp
+@@ -493,7 +493,7 @@ void printDefault(void)
+     cout << "The min and max of pair-end separations are 0 and 1Mb in a same ref, respectively" << endl;
+     cout << "By default, PerM outputs all the best alignments in terms of the mismatches number." << endl;
+     cout << "It throw away all reads with 'N' or '.' unless --includeReadsWN is specified" << endl;
+-    cout << "The default seeds varied in different the read lengthes and types." << endl;
++    cout << "The default seeds varied in different the read lengths and types." << endl;
+     cout << "It won't save the index if -s is not specified." << endl;
+     cout << "When -s is specified but not follow a path, a default filename is used to save the index." << endl;
+     cout << "That path will be test for index reused for the mapping next time." << endl;

-- 
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