[med-svn] [r-bioc-limma] 03/03: New upstream version

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository r-bioc-limma.

commit b05eadad4e3e68d7598081f9691448595df24f2b
Author: Andreas Tille <tille at debian.org>
Date:   Fri Jan 20 09:34:30 2017 +0100

    New upstream version
---
 debian/changelog                               |  6 +++
 debian/patches/do_not_attempt_GO.db_test.patch | 58 +++++++++++++-------------
 2 files changed, 35 insertions(+), 29 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 0247df5..ded14a7 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -1,3 +1,9 @@
+r-bioc-limma (3.30.8+dfsg-1) unstable; urgency=medium
+
+  * New upstream version
+
+ -- Andreas Tille <tille at debian.org>  Fri, 20 Jan 2017 09:15:01 +0100
+
 r-bioc-limma (3.30.7+dfsg-2) unstable; urgency=medium
 
   * Add missing test depends: r-cran-statmod
diff --git a/debian/patches/do_not_attempt_GO.db_test.patch b/debian/patches/do_not_attempt_GO.db_test.patch
index 5dd0d8a..ac89138 100644
--- a/debian/patches/do_not_attempt_GO.db_test.patch
+++ b/debian/patches/do_not_attempt_GO.db_test.patch
@@ -23,40 +23,40 @@ Description: the test is usin GO.db which is not yet packaged
 -> go <- goana(fit,FDR=0.8,geneid=EB)
 -> topGO(go,n=10,truncate.term=30)
 -                                     Term Ont  N Up Down        P.Up
--GO:0006915              apoptotic process  BP  5  4    1 0.003446627
--GO:0012501          programmed cell death  BP  5  4    1 0.003446627
+-GO:0009653 anatomical structure morpho...  BP 10  1    4 0.936627742
+-GO:0048856 anatomical structure develo...  BP 23  4    6 0.844070086
+-GO:0032502          developmental process  BP 23  4    6 0.844070086
 -GO:0055082 cellular chemical homeostas...  BP  2  0    2 1.000000000
--GO:0006897                    endocytosis  BP  3  3    0 0.005046382
--GO:0048856 anatomical structure develo...  BP 23  3    5 0.845083285
--GO:0032502          developmental process  BP 23  3    5 0.845083285
--GO:0008219                     cell death  BP  6  4    1 0.009129968
--GO:0019725           cellular homeostasis  BP  3  0    2 1.000000000
--GO:0048232         male gamete generation  BP  3  0    2 1.000000000
--GO:0007283                spermatogenesis  BP  3  0    2 1.000000000
+-GO:0006915              apoptotic process  BP  5  4    1 0.009503355
+-GO:0012501          programmed cell death  BP  5  4    1 0.009503355
+-GO:0006897                    endocytosis  BP  3  3    0 0.010952381
+-GO:0031988       membrane-bounded vesicle  CC 19  4    5 0.691026648
+-GO:0016485             protein processing  BP  7  1    3 0.849770470
+-GO:0005615            extracellular space  CC 13  5    4 0.143422146
 -                P.Down
--GO:0006915 0.309695910
--GO:0012501 0.309695910
--GO:0055082 0.004242424
+-GO:0009653 0.008224876
+-GO:0048856 0.009014340
+-GO:0032502 0.009014340
+-GO:0055082 0.009090909
+-GO:0006915 0.416247633
+-GO:0012501 0.416247633
 -GO:0006897 1.000000000
--GO:0048856 0.006651547
--GO:0032502 0.006651547
--GO:0008219 0.360560422
--GO:0019725 0.012294372
--GO:0048232 0.012294372
--GO:0007283 0.012294372
+-GO:0031988 0.020081679
+-GO:0016485 0.020760307
+-GO:0005615 0.023836810
 -> topGO(go,n=10,truncate.term=30,sort="down")
 -                                     Term Ont  N Up Down      P.Up      P.Down
--GO:0055082 cellular chemical homeostas...  BP  2  0    2 1.0000000 0.004242424
--GO:0048856 anatomical structure develo...  BP 23  3    5 0.8450833 0.006651547
--GO:0032502          developmental process  BP 23  3    5 0.8450833 0.006651547
--GO:0019725           cellular homeostasis  BP  3  0    2 1.0000000 0.012294372
--GO:0048232         male gamete generation  BP  3  0    2 1.0000000 0.012294372
--GO:0007283                spermatogenesis  BP  3  0    2 1.0000000 0.012294372
--GO:0009653 anatomical structure morpho...  BP 10  0    3 1.0000000 0.020760307
--GO:0031988       membrane-bounded vesicle  CC 19  1    4 0.9851064 0.023153004
--GO:0007276              gamete generation  BP  4  0    2 1.0000000 0.023749721
--GO:0032504 multicellular organism repr...  BP  4  0    2 1.0000000 0.023749721
+-GO:0009653 anatomical structure morpho...  BP 10  1    4 0.9366277 0.008224876
+-GO:0048856 anatomical structure develo...  BP 23  4    6 0.8440701 0.009014340
+-GO:0032502          developmental process  BP 23  4    6 0.8440701 0.009014340
+-GO:0055082 cellular chemical homeostas...  BP  2  0    2 1.0000000 0.009090909
+-GO:0031988       membrane-bounded vesicle  CC 19  4    5 0.6910266 0.020081679
+-GO:0016485             protein processing  BP  7  1    3 0.8497705 0.020760307
+-GO:0005615            extracellular space  CC 13  5    4 0.1434221 0.023836810
+-GO:0031982                        vesicle  CC 20  4    5 0.7361976 0.025464546
+-GO:0009887     animal organ morphogenesis  BP  3  0    2 1.0000000 0.025788497
+-GO:0019725           cellular homeostasis  BP  3  0    2 1.0000000 0.025788497
 -> 
 -> proc.time()
 -   user  system elapsed 
--   2.88    0.18    3.08 
+-   3.13    0.26    4.14 

-- 
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