[med-svn] [r-cran-vegan] 02/06: Merge tag 'upstream/2.4-2'

[Andreas Tille]

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tille pushed a commit to branch master
in repository r-cran-vegan.

commit 06b239af171dd8fa31ea4eb2de1565fefc216dde
Merge: f86db22 6a0cd67
Author: Andreas Tille <tille at debian.org>
Date:   Fri Jan 20 10:41:26 2017 +0100

    Merge tag 'upstream/2.4-2'
    
    Upstream version 2.4-2

 DESCRIPTION                      |   8 ++--
 MD5                              |  83 ++++++++++++++++++------------------
 R/adonis2.R                      |   5 ++-
 R/betadisper.R                   |   2 +-
 R/bioenv.formula.R               |   8 ++--
 R/capscale.R                     |  19 +++++----
 R/cca.formula.R                  |   5 ++-
 R/dbrda.R                        |  17 ++++----
 R/envfit.formula.R               |   6 +--
 R/fitted.capscale.R              |   2 +-
 R/hierParseFormula.R             |  10 ++---
 R/intersetcor.R                  |  13 +++---
 R/make.commsim.R                 |  59 +++++++++++---------------
 R/ordiGetData.R                  |  10 -----
 R/ordicluster.R                  |   4 +-
 R/permutest.cca.R                |  18 +++++---
 R/predict.rda.R                  |   2 +-
 R/rda.formula.R                  |  13 +++---
 R/scores.cca.R                   |   5 +++
 R/scores.rda.R                   |   5 +++
 R/simulate.rda.R                 |   3 +-
 R/stressplot.wcmdscale.R         |   2 +-
 R/tabasco.R                      |  49 ++++++++++++++--------
 R/tolerance.cca.R                |  88 ++++++++++++++++++++++-----------------
 build/partial.rdb                | Bin 21872 -> 21870 bytes
 data/dune.taxon.rda              | Bin 779 -> 758 bytes
 inst/NEWS.Rd                     |  86 +++++++++++++++++++++++++++++++++++++-
 inst/{ChangeLog => OldChangeLog} |   0
 inst/doc/decision-vegan.pdf      | Bin 340389 -> 340533 bytes
 inst/doc/diversity-vegan.pdf     | Bin 365471 -> 364765 bytes
 inst/doc/intro-vegan.pdf         | Bin 238294 -> 238492 bytes
 inst/doc/partitioning.pdf        | Bin 137193 -> 137361 bytes
 man/anova.cca.Rd                 |   8 ++--
 man/betadisper.Rd                |   2 +
 man/capscale.Rd                  |   7 ++--
 man/dune.taxon.Rd                |  26 +++++++++---
 man/envfit.Rd                    |  18 ++++++--
 man/plot.cca.Rd                  |  23 ++++++----
 man/tolerance.Rd                 |   7 ++--
 man/vegan-internal.Rd            |   6 +--
 man/vegemite.Rd                  |  18 +++++++-
 src/nestedness.c                 |   2 -
 src/vegdist.c                    |  32 +++++++-------
 43 files changed, 416 insertions(+), 255 deletions(-)

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