[med-svn] [r-cran-vegan] branch upstream updated (398f56e -> 6a0cd67)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch upstream
in repository r-cran-vegan.

      from  398f56e   Imported Upstream version 2.4-1
       new  6a0cd67   New upstream version 2.4-2

The 1 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 DESCRIPTION                      |   8 ++--
 MD5                              |  83 ++++++++++++++++++------------------
 R/adonis2.R                      |   5 ++-
 R/betadisper.R                   |   2 +-
 R/bioenv.formula.R               |   8 ++--
 R/capscale.R                     |  19 +++++----
 R/cca.formula.R                  |   5 ++-
 R/dbrda.R                        |  17 ++++----
 R/envfit.formula.R               |   6 +--
 R/fitted.capscale.R              |   2 +-
 R/hierParseFormula.R             |  10 ++---
 R/intersetcor.R                  |  13 +++---
 R/make.commsim.R                 |  59 +++++++++++---------------
 R/ordiGetData.R                  |  10 -----
 R/ordicluster.R                  |   4 +-
 R/permutest.cca.R                |  18 +++++---
 R/predict.rda.R                  |   2 +-
 R/rda.formula.R                  |  13 +++---
 R/scores.cca.R                   |   5 +++
 R/scores.rda.R                   |   5 +++
 R/simulate.rda.R                 |   3 +-
 R/stressplot.wcmdscale.R         |   2 +-
 R/tabasco.R                      |  49 ++++++++++++++--------
 R/tolerance.cca.R                |  88 ++++++++++++++++++++++-----------------
 build/partial.rdb                | Bin 21872 -> 21870 bytes
 data/dune.taxon.rda              | Bin 779 -> 758 bytes
 inst/NEWS.Rd                     |  86 +++++++++++++++++++++++++++++++++++++-
 inst/{ChangeLog => OldChangeLog} |   0
 inst/doc/decision-vegan.pdf      | Bin 340389 -> 340533 bytes
 inst/doc/diversity-vegan.pdf     | Bin 365471 -> 364765 bytes
 inst/doc/intro-vegan.pdf         | Bin 238294 -> 238492 bytes
 inst/doc/partitioning.pdf        | Bin 137193 -> 137361 bytes
 man/anova.cca.Rd                 |   8 ++--
 man/betadisper.Rd                |   2 +
 man/capscale.Rd                  |   7 ++--
 man/dune.taxon.Rd                |  26 +++++++++---
 man/envfit.Rd                    |  18 ++++++--
 man/plot.cca.Rd                  |  23 ++++++----
 man/tolerance.Rd                 |   7 ++--
 man/vegan-internal.Rd            |   6 +--
 man/vegemite.Rd                  |  18 +++++++-
 src/nestedness.c                 |   2 -
 src/vegdist.c                    |  32 +++++++-------
 43 files changed, 416 insertions(+), 255 deletions(-)
 delete mode 100644 R/ordiGetData.R
 rename inst/{ChangeLog => OldChangeLog} (100%)

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