[med-svn] r23650 - in trunk/packages/R: . r-bioc-metagenomeseq/trunk/debian r-cran-worrms r-cran-worrms/trunk r-cran-worrms/trunk/debian r-cran-worrms/trunk/debian/source r-cran-worrms/trunk/debian/tests
Andreas Tille
tille at moszumanska.debian.org
Fri Jan 20 11:50:54 UTC 2017
Author: tille
Date: 2017-01-20 11:50:54 +0000 (Fri, 20 Jan 2017)
New Revision: 23650
Added:
trunk/packages/R/r-cran-worrms/
trunk/packages/R/r-cran-worrms/trunk/
trunk/packages/R/r-cran-worrms/trunk/debian/
trunk/packages/R/r-cran-worrms/trunk/debian/README.test
trunk/packages/R/r-cran-worrms/trunk/debian/changelog
trunk/packages/R/r-cran-worrms/trunk/debian/compat
trunk/packages/R/r-cran-worrms/trunk/debian/control
trunk/packages/R/r-cran-worrms/trunk/debian/copyright
trunk/packages/R/r-cran-worrms/trunk/debian/docs
trunk/packages/R/r-cran-worrms/trunk/debian/rules
trunk/packages/R/r-cran-worrms/trunk/debian/source/
trunk/packages/R/r-cran-worrms/trunk/debian/source/format
trunk/packages/R/r-cran-worrms/trunk/debian/tests/
trunk/packages/R/r-cran-worrms/trunk/debian/tests/control
trunk/packages/R/r-cran-worrms/trunk/debian/tests/run-unit-test
trunk/packages/R/r-cran-worrms/trunk/debian/watch
Modified:
trunk/packages/R/r-bioc-metagenomeseq/trunk/debian/README.test
Log:
Add r-cran-worrms
Modified: trunk/packages/R/r-bioc-metagenomeseq/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-bioc-metagenomeseq/trunk/debian/README.test 2017-01-20 11:50:04 UTC (rev 23649)
+++ trunk/packages/R/r-bioc-metagenomeseq/trunk/debian/README.test 2017-01-20 11:50:54 UTC (rev 23650)
@@ -1,8 +1,10 @@
Notes on how this package can be tested.
────────────────────────────────────────
-This package can be tested by running the provided test:
+You can run the test suite by doing
- sh ./run-unit-test
+R --no-save <<EOT
+BiocGenerics:::testPackage("metagenomeSeq")
+EOT
-in order to confirm its integrity.
+ -- Andreas Tille <tille at debian.org> Mon, 16 Jun 2014 16:28:55 +0200
Added: trunk/packages/R/r-cran-worrms/trunk/debian/README.test
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/README.test (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/README.test 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,8 @@
+Notes on how this package can be tested.
+────────────────────────────────────────
+
+To run the unit tests provided by the package you can do
+
+ sh run-unit-test
+
+in this directory.
Added: trunk/packages/R/r-cran-worrms/trunk/debian/changelog
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/changelog (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/changelog 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,17 @@
+r-cran-truncnorm (1.0-7-2) unstable; urgency=medium
+
+ * Fix license
+ Closes: #815687
+ * Canonical homepage for CRAN
+ * cme fix dpkg-control
+ * Convert to dh-r
+ * debhelper 10
+ * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org> Mon, 12 Dec 2016 11:16:51 +0100
+
+r-cran-truncnorm (1.0-7-1) unstable; urgency=low
+
+ * Initial release (closes: #752164)
+
+ -- Andreas Tille <tille at debian.org> Fri, 20 Jun 2014 11:47:43 +0200
Added: trunk/packages/R/r-cran-worrms/trunk/debian/compat
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/compat (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/compat 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1 @@
+10
Added: trunk/packages/R/r-cran-worrms/trunk/debian/control
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/control (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/control 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,23 @@
+Source: r-cran-truncnorm
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Andreas Tille <tille at debian.org>
+Section: gnu-r
+Priority: optional
+Build-Depends: debhelper (>= 10),
+ dh-r,
+ r-base-dev
+Standards-Version: 3.9.8
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-truncnorm/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-truncnorm/trunk/
+Homepage: https://cran.r-project.org/package=truncnorm
+
+Package: r-cran-truncnorm
+Architecture: any
+Depends: ${shlibs:Depends},
+ ${misc:Depends},
+ ${R:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
+Description: GNU R truncated normal distribution
+ This GNU R package provides r/d/p/q functions for the truncated normal
+ distribution.
Added: trunk/packages/R/r-cran-worrms/trunk/debian/copyright
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/copyright (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/copyright 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,29 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: truncnorm
+Upstream-Contact: Olaf Mersmann <olafm at statistik.uni-dortmund.de>
+Source: https://cran.r-project.org/package=truncnorm
+
+Files: *
+Copyright: 2012-2014 Heike Trautmann, Detlef Steuer, Olaf Mersmann, Björn Bornkamp
+License: GPL-2
+
+Files: debian/*
+Copyright: 2014-2016 Andreas Tille <tille at debian.org>
+License: GPL-2
+
+License: GPL-2
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 2 of the License.
+ .
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <http://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU Public
+ License can be found in `/usr/share/common-licenses/GPL-2'.
+
Added: trunk/packages/R/r-cran-worrms/trunk/debian/docs
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/docs (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/docs 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,3 @@
+debian/README.test
+debian/tests/run-unit-test
+tests
Added: trunk/packages/R/r-cran-worrms/trunk/debian/rules
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/rules (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/rules 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,4 @@
+#!/usr/bin/make -f
+
+%:
+ dh $@ --buildsystem R
Property changes on: trunk/packages/R/r-cran-worrms/trunk/debian/rules
___________________________________________________________________
Added: svn:executable
+ *
Added: trunk/packages/R/r-cran-worrms/trunk/debian/source/format
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/source/format (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/source/format 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1 @@
+3.0 (quilt)
Added: trunk/packages/R/r-cran-worrms/trunk/debian/tests/control
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/tests/control (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/tests/control 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,3 @@
+Tests: run-unit-test
+Depends: @, r-cran-runit
+Restrictions: allow-stderr
Added: trunk/packages/R/r-cran-worrms/trunk/debian/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/tests/run-unit-test (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/tests/run-unit-test 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,15 @@
+#!/bin/sh -e
+
+oname=truncnorm
+pkg=r-cran-`echo $oname | tr '[A-Z]' '[a-z]'`
+
+if [ "$ADTTMP" = "" ] ; then
+ ADTTMP=`mktemp -d /tmp/${pkg}-test.XXXXXX`
+ trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
+fi
+cd $ADTTMP
+cp /usr/share/doc/${pkg}/tests/* $ADTTMP
+find . -name "*.gz" -exec gunzip \{\} \;
+for runtest in `ls *.R` ; do
+ R --no-save < $runtest
+done
Added: trunk/packages/R/r-cran-worrms/trunk/debian/watch
===================================================================
--- trunk/packages/R/r-cran-worrms/trunk/debian/watch (rev 0)
+++ trunk/packages/R/r-cran-worrms/trunk/debian/watch 2017-01-20 11:50:54 UTC (rev 23650)
@@ -0,0 +1,2 @@
+version=4
+http://cran.r-project.org/src/contrib/truncnorm_([-\d.]*)\.tar\.gz
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