[med-svn] [pbgenomicconsensus] 03/05: Update manpage for new release

Afif Elghraoui afif at moszumanska.debian.org
Sat Jan 21 21:59:12 UTC 2017


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commit 82f8f8cb4a1d590336a68b87da5672dcd5992476
Author: Afif Elghraoui <afif at debian.org>
Date:   Sat Jul 23 19:37:57 2016 -0700

    Update manpage for new release
---
 debian/man/variantCaller.1.md | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/debian/man/variantCaller.1.md b/debian/man/variantCaller.1.md
index c7c4aa2..f749cd7 100644
--- a/debian/man/variantCaller.1.md
+++ b/debian/man/variantCaller.1.md
@@ -187,6 +187,9 @@ release of SMRTanalysis 3.0 or build from GitHub sources.*
 Running a large-scale resequencing/polishing job in SMRTanalysis 2.3
 --------------------------------------------------------------------
 
+We do not recommend attempting to construct a single giant cmp.h5 file and then processing it on a single node.
+This is inefficient and users attempting to do this have run into many problems with the instability of the HDF5 library (which PacBio is moving away from, in favor of BAM.)
+
 To run a large-scale resequencing job (\>50 megabase genome @ 50x
 coverage,nominally), you want to spread the computation load across
 multiple nodes in your computing cluster.

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