[med-svn] [pbbam] 01/06: Update running of tests at build-time

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository pbbam.

commit e4e096e336fe213a8768b6176d5a80510e6aa206
Author: Afif Elghraoui <afif at debian.org>
Date:   Sat Jan 21 23:22:09 2017 -0800

    Update running of tests at build-time
---
 debian/control |  1 +
 debian/rules   | 22 +++++++++++++++++-----
 2 files changed, 18 insertions(+), 5 deletions(-)

diff --git a/debian/control b/debian/control
index 0b0ed18..ae1443e 100644
--- a/debian/control
+++ b/debian/control
@@ -7,6 +7,7 @@ Build-Depends:
 	debhelper (>= 9),
 	dh-exec,
 	cmake,
+	python,
 #	swig3.0,
 	libboost-dev (>= 1.54),
 	zlib1g-dev,
diff --git a/debian/rules b/debian/rules
index 5c36f45..f3a1d7a 100755
--- a/debian/rules
+++ b/debian/rules
@@ -2,9 +2,10 @@
 
 #DH_VERBOSE = 1
 export LC_ALL=C.UTF-8
-include /usr/share/dpkg/architecture.mk
+include /usr/share/dpkg/default.mk
 
-export LD_LIBRARY_PATH:=$(CURDIR)/lib:$(LD_LIBRARY_PATH)
+DEB_VERSION_UPSTREAM := $(subst +ds,,$(DEB_VERSION_UPSTREAM))
+generated_data_dir = $(CURDIR)/gendata
 
 %:
 	  dh $@ --parallel
@@ -21,8 +22,13 @@ override_dh_auto_configure:
 #	-DPacBioBAM_wrap_python=ON \
 #	-DPacBioBAM_wrap_r=ON
 
-override_dh_auto_test: $(subst .t,.deb.t,$(wildcard tests/src/cram/pb*.t))
-	TESTDIR=tests/src/cram cram -v $^
+override_dh_auto_test: $(subst .t.in,.deb.t,$(wildcard tests/src/cram/pb*.t.in))
+	mkdir -p $(generated_data_dir)
+	python tests/scripts/generate_data.py $(CURDIR)/tests/data $(generated_data_dir)
+	BINDIR=`find $$PWD -name bin -type d`; \
+	LIBDIR=`find $$PWD -name lib -type d`; \
+	PATH="$$BINDIR:$(PATH)" LD_LIBRARY_PATH="$$LIBDIR:$(LD_LIBRARY_PATH)" \
+	cram -v $^
 
 override_dh_installchangelogs:
 	dh_installchangelogs CHANGELOG.md
@@ -30,11 +36,17 @@ override_dh_installchangelogs:
 override_dh_auto_clean:
 	dh_auto_clean
 	find -name "*.deb.t" -delete
+	$(RM) -r $(generated_data_dir)
 
-%.deb.t: %.t
+%.deb.t: %.t.in
 	sed \
 	-e 's/$$BAM2SAM/samtools view/g' \
 	-e 's/\-\-header\-only/-H/g' \
 	-e 's/\-\-no\-header//g' \
+	-e 's|@PacBioBAM_BinDir@/||g' \
+	-e 's|$$TOOLS_BIN/||g' \
+	-e 's|@PacBioBAM_TestsDir@|$(CURDIR)/tests|g' \
+	-e 's|@PacBioBAM_VERSION@|$(DEB_VERSION_UPSTREAM)|g' \
+	-e 's|@GeneratedTestDataDir@|$(generated_data_dir)|g' \
 	$< > $@
 

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