[med-svn] [circlator] branch master updated (a0a6ef6 -> 92736a6)

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a change to branch master
in repository circlator.

      from  a0a6ef6   releasing package circlator version 1.4.0-1
       new  2224d66   New upstream version 1.4.1
       new  450302b   Merge tag 'upstream/1.4.1'
       new  92736a6   new upstream release

The 3 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 circlator/bamfilter.py                             |  28 +++++-----
 circlator/merge.py                                 |   6 +--
 circlator/tasks/all.py                             |   9 ++--
 circlator/tasks/bam2reads.py                       |   2 +
 circlator/tests/bamfilter_test.py                  |  58 ++++++++++++++++++---
 .../bamfilter_test_run_keep_unmapped.out.reads.fq  |  32 ++++++++++++
 ...test_run.bam => bamfilter_test_run_no_qual.bam} | Bin
 ....bam.bai => bamfilter_test_run_no_qual.bam.bai} | Bin
 .../tests/data/bamfilter_test_run_with_qual.bam    | Bin 0 -> 908 bytes
 ...am.bai => bamfilter_test_run_with_qual.bam.bai} | Bin
 debian/changelog                                   |   7 +++
 setup.py                                           |   2 +-
 12 files changed, 118 insertions(+), 26 deletions(-)
 create mode 100644 circlator/tests/data/bamfilter_test_run_keep_unmapped.out.reads.fq
 rename circlator/tests/data/{bamfilter_test_run.bam => bamfilter_test_run_no_qual.bam} (100%)
 copy circlator/tests/data/{bamfilter_test_run.bam.bai => bamfilter_test_run_no_qual.bam.bai} (100%)
 create mode 100644 circlator/tests/data/bamfilter_test_run_with_qual.bam
 rename circlator/tests/data/{bamfilter_test_run.bam.bai => bamfilter_test_run_with_qual.bam.bai} (100%)

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