[med-svn] [circlator] 02/03: Merge tag 'upstream/1.4.1'

[Sascha Steinbiss]

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satta pushed a commit to branch master
in repository circlator.

commit 450302be19e80b592853de95782ea7dbba11e7c8
Merge: a0a6ef6 2224d66
Author: Sascha Steinbiss <sascha at steinbiss.name>
Date:   Tue Jan 24 17:26:57 2017 +0100

    Merge tag 'upstream/1.4.1'
    
    Upstream version 1.4.1

 circlator/bamfilter.py                             |  28 +++++-----
 circlator/merge.py                                 |   6 +--
 circlator/tasks/all.py                             |   9 ++--
 circlator/tasks/bam2reads.py                       |   2 +
 circlator/tests/bamfilter_test.py                  |  58 ++++++++++++++++++---
 .../bamfilter_test_run_keep_unmapped.out.reads.fq  |  32 ++++++++++++
 ...test_run.bam => bamfilter_test_run_no_qual.bam} | Bin
 ....bam.bai => bamfilter_test_run_no_qual.bam.bai} | Bin
 .../tests/data/bamfilter_test_run_with_qual.bam    | Bin 0 -> 908 bytes
 ...am.bai => bamfilter_test_run_with_qual.bam.bai} | Bin
 setup.py                                           |   2 +-
 11 files changed, 111 insertions(+), 26 deletions(-)

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