[med-svn] [python-cobra] branch master updated (7eb81c0 -> e463c21)

[Afif Elghraoui]

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afif pushed a change to branch master
in repository python-cobra.

      from  7eb81c0   Add new changelog entry - this upstream release has no user-visible changes
       new  ca2efe8   Imported Upstream version 0.5.9
       new  f3ecb86   Merge tag 'upstream/0.5.9'
       new  d9b07f9   Refresh patch
       new  e463c21   releasing package python-cobra version 0.5.9-1

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                                   |   3 +-
 CONTRIBUTING.rst                              |  14 ++---
 INSTALL.rst                                   |   4 +-
 appveyor.yml                                  |   1 +
 appveyor/build_glpk.py                        |   4 +-
 cobra/VERSION                                 |   2 +-
 cobra/io/mat.py                               |  84 ++++++++++++++++++++------
 cobra/io/sbml.py                              |  25 +++++---
 cobra/io/sbml3.py                             |   4 +-
 cobra/manipulation/delete.py                  |  50 ++++++++-------
 cobra/test/data/raven.mat                     | Bin 0 -> 2519 bytes
 cobra/test/data/raven.pickle                  | Bin 0 -> 11233 bytes
 cobra/test/data/update_pickles.py             |   5 +-
 cobra/test/test_io.py                         |  37 +++++++-----
 cobra/test/test_manipulation.py               |  11 ++++
 debian/changelog                              |   7 ++-
 debian/patches/exclude-pytest-benchmark.patch |  22 +++++--
 17 files changed, 176 insertions(+), 97 deletions(-)
 create mode 100644 cobra/test/data/raven.mat
 create mode 100644 cobra/test/data/raven.pickle

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