[med-svn] [python-cobra] 02/04: Merge tag 'upstream/0.5.9'

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository python-cobra.

commit f3ecb86f61752ebb3aa2455366967da1d2ae9afb
Merge: 7eb81c0 ca2efe8
Author: Afif Elghraoui <afif at debian.org>
Date:   Wed Jan 25 00:24:36 2017 -0800

    Merge tag 'upstream/0.5.9'
    
    Upstream version 0.5.9

 .travis.yml                       |   3 +-
 CONTRIBUTING.rst                  |  14 +++----
 INSTALL.rst                       |   4 +-
 appveyor.yml                      |   1 +
 appveyor/build_glpk.py            |   4 +-
 cobra/VERSION                     |   2 +-
 cobra/io/mat.py                   |  84 +++++++++++++++++++++++++++++---------
 cobra/io/sbml.py                  |  25 +++++++-----
 cobra/io/sbml3.py                 |   4 +-
 cobra/manipulation/delete.py      |  50 +++++++++++------------
 cobra/test/data/raven.mat         | Bin 0 -> 2519 bytes
 cobra/test/data/raven.pickle      | Bin 0 -> 11233 bytes
 cobra/test/data/update_pickles.py |   5 ++-
 cobra/test/test_io.py             |  37 ++++++++++-------
 cobra/test/test_manipulation.py   |  11 +++++
 15 files changed, 156 insertions(+), 88 deletions(-)

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