[med-svn] [umap] 02/02: Initial packaging

[Afif Elghraoui]

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afif pushed a commit to branch master
in repository umap.

commit 99d11334409f699fbaacb0ac770ba3d71c6c2543
Author: Afif Elghraoui <afif at ghraoui.name>
Date:   Wed Jan 25 01:45:18 2017 -0800

    Initial packaging
---
 debian/changelog     |  5 +++++
 debian/compat        |  1 +
 debian/control       | 27 +++++++++++++++++++++++++++
 debian/copyright     | 29 +++++++++++++++++++++++++++++
 debian/docs          |  1 +
 debian/rules         |  6 ++++++
 debian/source/format |  1 +
 debian/watch         |  6 ++++++
 8 files changed, 76 insertions(+)

diff --git a/debian/changelog b/debian/changelog
new file mode 100644
index 0000000..e8e2b5a
--- /dev/null
+++ b/debian/changelog
@@ -0,0 +1,5 @@
+umap (1.0.0-1) UNRELEASED; urgency=medium
+
+  * Initial release (Closes: #nnnn)
+
+ -- Afif Elghraoui <afif at debian.org>  Wed, 25 Jan 2017 01:29:12 -0800
diff --git a/debian/compat b/debian/compat
new file mode 100644
index 0000000..ec63514
--- /dev/null
+++ b/debian/compat
@@ -0,0 +1 @@
+9
diff --git a/debian/control b/debian/control
new file mode 100644
index 0000000..46bff4b
--- /dev/null
+++ b/debian/control
@@ -0,0 +1,27 @@
+Source: umap
+Section: science
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Afif Elghraoui <afif at debian.org>
+Build-Depends:
+	debhelper (>=9),
+	dh-python,
+	python-all,
+	python-setuptools,
+	python-numpy,
+	python-pandas,
+Standards-Version: 3.9.8
+Homepage: https://bitbucket.org/hoffmanlab/umap
+Vcs-Git: https://anonscm.debian.org/git/debian-med/umap.git
+Vcs-Browser: https://anonscm.debian.org/git/debian-med/umap.git
+
+Package: umap
+Architecture: all
+Depends:
+	${python:Depends},
+	${misc:Depends},
+	bowtie,
+Description: quantify genome and methylome mappability
+ Umap identifies uniquely mappable regions of any genome. Its Bismap
+ extension identifies mappability of the bisulfite converted
+ genome (methylome).
diff --git a/debian/copyright b/debian/copyright
new file mode 100644
index 0000000..e19bc46
--- /dev/null
+++ b/debian/copyright
@@ -0,0 +1,29 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: umap
+Upstream-Contact: Mehran Karimzadeh <mehran.karimzadeh at uhnresearch.ca>
+Source: https://bitbucket.org/hoffmanlab/umap
+
+Files: *
+Copyright: 2016 Mehran Karimzadeh, Carl Ernst, Anshul Kundaje, and
+	        Michael M. Hoffman
+License: GPL-3.0
+
+Files: debian/*
+Copyright: 2017 Afif Elghraoui <afif at debian.org>
+License: GPL-3.0
+
+License: GPL-3.0+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation.
+ .
+ This package is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+ GNU General Public License for more details.
+ .
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see <https://www.gnu.org/licenses/>.
+ .
+ On Debian systems, the complete text of the GNU General
+ Public License version 3 can be found in "/usr/share/common-licenses/GPL-3".
diff --git a/debian/docs b/debian/docs
new file mode 100644
index 0000000..a1320b1
--- /dev/null
+++ b/debian/docs
@@ -0,0 +1 @@
+README.rst
diff --git a/debian/rules b/debian/rules
new file mode 100755
index 0000000..66ac395
--- /dev/null
+++ b/debian/rules
@@ -0,0 +1,6 @@
+#!/usr/bin/make -f
+
+#export DH_VERBOSE = 1
+
+%:
+	dh $@  --with python2 --buildsystem=pybuild
diff --git a/debian/source/format b/debian/source/format
new file mode 100644
index 0000000..163aaf8
--- /dev/null
+++ b/debian/source/format
@@ -0,0 +1 @@
+3.0 (quilt)
diff --git a/debian/watch b/debian/watch
new file mode 100644
index 0000000..8e97e78
--- /dev/null
+++ b/debian/watch
@@ -0,0 +1,6 @@
+version=4
+
+opts="filenamemangle=s%(?:.*?)?[Vv]?(\d[\d.]*)\.tar\.bz2%umap-$1.tar.gz%" \
+   https://bitbucket.org/hoffmanlab/umap/downloads?tab=tags \
+   (?:.*?/)?[Vv]?(\d[\d.]*)\.tar\.bz2 \
+   debian uupdate

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