[med-svn] [python-pysam] 01/02: Revert "Revert changes in d/rules and deactivate RPATH patch"

[Afif Elghraoui]

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in repository python-pysam.

commit 06661e55d73d27b7f6e5cf531e2fa0b96f1d4bd3
Author: Afif Elghraoui <afif at debian.org>
Date:   Wed Jan 25 22:15:40 2017 -0800

    Revert "Revert changes in d/rules and deactivate RPATH patch"
    
    This reverts commit b8a194c46277fb95b365484360652b765380ffdb.
    
    Conflicts:
    	debian/changelog
---
 debian/patches/series | 2 +-
 debian/rules          | 8 +++++---
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/debian/patches/series b/debian/patches/series
index 446c7fc..da8b790 100644
--- a/debian/patches/series
+++ b/debian/patches/series
@@ -1 +1 @@
-# rpath.patch
+rpath.patch
diff --git a/debian/rules b/debian/rules
index 45f2fff..1534c65 100755
--- a/debian/rules
+++ b/debian/rules
@@ -14,12 +14,12 @@ HTSLIBDIR  := /usr/lib/$(DEB_HOST_MULTIARCH)
 export HTSLIB_LIBRARY_DIR=$(HTSLIBDIR)
 export HTSLIB_INCLUDE_DIR=/usr/include
 
-export PYBUILD_TEST_NOSE=1
+#export PYBUILD_TEST_NOSE=1
 # pybuild calls nosetests as `python{version} -m nose tests`
 #
 # The "tests" argument (passed by pybuild as shown above) fails,
 # so don't pass anything:
-export PYBUILD_TEST_ARGS=
+#export PYBUILD_TEST_ARGS=
 # This is how we pass parameters to nose without command-line flags
 export NOSE_WHERE=$(CURDIR)/tests
 export NOSE_VERBOSE=2
@@ -35,7 +35,9 @@ override_dh_install: clean-tests
 	dh_install -Xtest.gtf.gz
 
 override_dh_auto_test: pysam_data.all cbcf_data.all
-	dh_auto_test
+	#dh_auto_test
+	dh_auto_test -- --test --system=custom \
+			--test-args='set -x; echo "{build_dir}/pysam {interpreter}"; LD_LIBRARY_PATH={build_dir}/pysam {interpreter} -m nose'
 
 override_dh_auto_clean:
 	dh_auto_clean

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