[med-svn] [libbio-eutilities-perl] 01/03: Inline DTDs on XML files required for testsuite so no internet is necessary

Andreas Tille tille at debian.org
Fri Jan 27 12:00:20 UTC 2017 

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository libbio-eutilities-perl.

commit e827f7d31448beddd8c326e5909199a8a0b2e403
Author: Carnë Draug <carandraug+dev at gmail.com>
Date:   Thu Jan 26 18:01:49 2017 +0000

    Inline DTDs on XML files required for testsuite so no internet is necessary
---
 debian/patches/inline-DTDs-on-testsuite | 948 ++++++++++++++++++++++++++++++++
 debian/patches/series                   |   1 +
 2 files changed, 949 insertions(+)

diff --git a/debian/patches/inline-DTDs-on-testsuite b/debian/patches/inline-DTDs-on-testsuite
new file mode 100644
index 0000000..589c51c
--- /dev/null
+++ b/debian/patches/inline-DTDs-on-testsuite
@@ -0,0 +1,948 @@
+Index: libbio-eutilities-perl/t/data/eutils/egquery.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/egquery.xml
++++ libbio-eutilities-perl/t/data/eutils/egquery.xml
+@@ -1,11 +1,21 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE Result PUBLIC "-//NLM//DTD eSearchResult, January 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/egquery.dtd">
+-
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE Result [
++<!--
++        This is the Current DTD for Entrez eGSearch
++        $Id: egquery.dtd 39250 2004-05-03 16:19:48Z yasmax $
++--><!-- ================================================================= --><!ELEMENT DbName (#PCDATA)>
++<!-- .+ --><!ELEMENT MenuName (#PCDATA)>
++<!-- .+ --><!ELEMENT Count (#PCDATA)>
++<!-- \d+ --><!ELEMENT Status (#PCDATA)>
++<!-- .+ --><!ELEMENT Term (#PCDATA)>
++<!-- .+ --><!ELEMENT ResultItem (DbName , MenuName , Count , Status)>
++<!ELEMENT eGQueryResult (ResultItem)+>
++<!ELEMENT Result (Term , eGQueryResult)>
++]>
+ <!--
+         $Id: egquery_template.xml 106311 2007-06-26 14:46:31Z osipov $
+ -->
+ <!-- ================================================================= -->
+-
+ <Result>
+ 
+         <Term>Notch AND Mus musculus</Term>
+Index: libbio-eutilities-perl/t/data/eutils/einfo.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/einfo.xml
++++ libbio-eutilities-perl/t/data/eutils/einfo.xml
+@@ -1,5 +1,35 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eInfoResult PUBLIC "-//NLM//DTD eInfoResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eInfo_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eInfoResult [
++<!--    
++                This is the Current DTD for Entrez eInfo
++$Id: eInfo_020511.dtd 393292 2013-03-22 21:30:47Z fialkov $
++--><!-- ================================================================= --><!ELEMENT DbName (#PCDATA)>
++<!-- \S+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT FullName (#PCDATA)>
++<!-- .+ --><!ELEMENT Description (#PCDATA)>
++<!-- .+ --><!ELEMENT DbBuild (#PCDATA)>
++<!-- .+ --><!ELEMENT TermCount (#PCDATA)>
++<!-- \d+ --><!ELEMENT Menu (#PCDATA)>
++<!-- .+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT MenuName (#PCDATA)>
++<!-- .+ --><!ELEMENT Count (#PCDATA)>
++<!-- \d+ --><!ELEMENT LastUpdate (#PCDATA)>
++<!-- \d+ --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT IsDate (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsNumerical (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT SingleToken (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT Hierarchy (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsHidden (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsRangable (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsTruncatable (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT DbList (DbName)+>
++<!ELEMENT Field (Name , FullName , Description , TermCount , IsDate , IsNumerical , SingleToken , Hierarchy , IsHidden , IsRangable? , IsTruncatable?)>
++<!ELEMENT Link (Name , Menu , Description , DbTo)>
++<!ELEMENT LinkList (Link)*>
++<!ELEMENT FieldList (Field)*>
++<!ELEMENT DbInfo (DbName , MenuName , Description , DbBuild? , Count , LastUpdate , FieldList , LinkList?)>
++<!ELEMENT eInfoResult (DbList | DbInfo | ERROR)>
++]>
+ <eInfoResult>
+ <DbInfo>
+ 	<DbName>pubmed</DbName>
+Index: libbio-eutilities-perl/t/data/eutils/einfo_dbs.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/einfo_dbs.xml
++++ libbio-eutilities-perl/t/data/eutils/einfo_dbs.xml
+@@ -1,5 +1,35 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eInfoResult PUBLIC "-//NLM//DTD eInfoResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eInfo_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eInfoResult [
++<!--    
++                This is the Current DTD for Entrez eInfo
++$Id: eInfo_020511.dtd 393292 2013-03-22 21:30:47Z fialkov $
++--><!-- ================================================================= --><!ELEMENT DbName (#PCDATA)>
++<!-- \S+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT FullName (#PCDATA)>
++<!-- .+ --><!ELEMENT Description (#PCDATA)>
++<!-- .+ --><!ELEMENT DbBuild (#PCDATA)>
++<!-- .+ --><!ELEMENT TermCount (#PCDATA)>
++<!-- \d+ --><!ELEMENT Menu (#PCDATA)>
++<!-- .+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT MenuName (#PCDATA)>
++<!-- .+ --><!ELEMENT Count (#PCDATA)>
++<!-- \d+ --><!ELEMENT LastUpdate (#PCDATA)>
++<!-- \d+ --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT IsDate (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsNumerical (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT SingleToken (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT Hierarchy (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsHidden (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsRangable (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT IsTruncatable (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT DbList (DbName)+>
++<!ELEMENT Field (Name , FullName , Description , TermCount , IsDate , IsNumerical , SingleToken , Hierarchy , IsHidden , IsRangable? , IsTruncatable?)>
++<!ELEMENT Link (Name , Menu , Description , DbTo)>
++<!ELEMENT LinkList (Link)*>
++<!ELEMENT FieldList (Field)*>
++<!ELEMENT DbInfo (DbName , MenuName , Description , DbBuild? , Count , LastUpdate , FieldList , LinkList?)>
++<!ELEMENT eInfoResult (DbList | DbInfo | ERROR)>
++]>
+ <eInfoResult>
+ <DbList>
+ 	<DbName>pubmed</DbName>
+Index: libbio-eutilities-perl/t/data/eutils/elink_acheck.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_acheck.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_acheck.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_acheck_corr.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_acheck_corr.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_acheck_corr.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_dball.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_dball.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_dball.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_lcheck.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_lcheck.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_lcheck.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_lcheck_corr.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_lcheck_corr.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_lcheck_corr.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_llinks.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_llinks.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_llinks.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_llinks_corr.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_llinks_corr.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_llinks_corr.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_multidb.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_multidb.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_multidb.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_multidb_corr.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_multidb_corr.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_multidb_corr.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_ncheck.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_ncheck.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_ncheck.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_ncheck_corr.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_ncheck_corr.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_ncheck_corr.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_neighbor.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_neighbor.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_neighbor.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_neighbor_corr.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_neighbor_corr.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_neighbor_corr.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_nhist.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_nhist.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_nhist.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_nhist_corr.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_nhist_corr.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_nhist_corr.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/elink_scores.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/elink_scores.xml
++++ libbio-eutilities-perl/t/data/eutils/elink_scores.xml
+@@ -1,5 +1,34 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eLinkResult PUBLIC "-//NLM//DTD eLinkResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eLink_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eLinkResult [
++<!--    
++                This is the Current DTD for Entrez eLink
++$Id: eLink_020511.dtd 56256 2005-02-18 17:13:40Z olegh $
++--><!-- ================================================================= --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT Info (#PCDATA)>
++<!-- .+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ATTLIST Id HasLinkOut (Y | N) #IMPLIED>
++<!ATTLIST Id HasNeighbor (Y | N) #IMPLIED>
++<!ELEMENT Score (#PCDATA)>
++<!-- \d+ --><!ELEMENT DbFrom (#PCDATA)>
++<!-- \S+ --><!ELEMENT DbTo (#PCDATA)>
++<!-- \S+ --><!ELEMENT LinkName (#PCDATA)>
++<!-- \S+ --><!ELEMENT IdList (Id)*>
++<!-- cmd=neighbor --><!ELEMENT Link (Id , Score?)>
++<!ELEMENT LinkSetDb (DbTo , LinkName , (Link* | Info) , ERROR?)>
++<!-- cmd=links --><!ELEMENT Url (#PCDATA)>
++<!-- \S+ --><!ELEMENT IconUrl (#PCDATA)>
++<!-- \S+ --><!ELEMENT SubjectType (#PCDATA)>
++<!-- .+ --><!ELEMENT Attribute (#PCDATA)>
++<!-- .+ --><!ELEMENT Name (#PCDATA)>
++<!-- .+ --><!ELEMENT NameAbbr (#PCDATA)>
++<!-- \S+ --><!ELEMENT Provider (Name , NameAbbr , Id , Url , IconUrl?)>
++<!ELEMENT ObjUrl (Url , IconUrl? , LinkName? , SubjectType* , Attribute* , Provider)>
++<!ELEMENT IdUrlSet (Id , (ObjUrl+ | Info))>
++<!ELEMENT IdUrlList (IdUrlSet* , ERROR?)>
++<!-- cmd=ncheck & lcheck --><!ELEMENT IdCheckList (Id* , ERROR?)>
++<!-- Common --><!ELEMENT LinkSet (DbFrom , ((IdList? , LinkSetDb*) | IdUrlList | IdCheckList | ERROR))>
++<!ELEMENT eLinkResult (LinkSet* , ERROR?)>
++]>
+ <eLinkResult>
+ <LinkSet>
+ 	<DbFrom>protein</DbFrom>
+Index: libbio-eutilities-perl/t/data/eutils/epost.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/epost.xml
++++ libbio-eutilities-perl/t/data/eutils/epost.xml
+@@ -1,5 +1,15 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE ePostResult PUBLIC "-//NLM//DTD ePostResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/ePost_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE ePostResult [
++<!--    
++                This is the Current DTD for Entrez ePost
++$Id: ePost_020511.dtd 161288 2009-05-26 18:34:21Z fialkov $
++--><!-- ================================================================= --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ELEMENT InvalidIdList (Id)+>
++<!ELEMENT QueryKey (#PCDATA)>
++<!-- \d+ --><!ELEMENT WebEnv (#PCDATA)>
++<!-- \S+ --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT ePostResult (InvalidIdList? , (QueryKey , WebEnv)? , ERROR?)>
++]>
+ <ePostResult>
+ 	<QueryKey>1</QueryKey>
+ 	<WebEnv>0rACq8_iP87yHkqqm0SBaU38LzWLHIUd-J4QozMr31bh_XO5KAxLr5Q0o2e at 03ED1E11941B69F1_0100SID</WebEnv>
+Index: libbio-eutilities-perl/t/data/eutils/esearch1.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/esearch1.xml
++++ libbio-eutilities-perl/t/data/eutils/esearch1.xml
+@@ -1,5 +1,36 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eSearchResult PUBLIC "-//NLM//DTD eSearchResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eSearchResult [
++<!--    
++                This is the Current DTD for Entrez eSearch
++$Id: eSearch_020511.dtd 85163 2006-06-28 17:35:21Z olegh $
++--><!-- ================================================================= --><!ELEMENT Count (#PCDATA)>
++<!-- \d+ --><!ELEMENT RetMax (#PCDATA)>
++<!-- \d+ --><!ELEMENT RetStart (#PCDATA)>
++<!-- \d+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ELEMENT From (#PCDATA)>
++<!-- .+ --><!ELEMENT To (#PCDATA)>
++<!-- .+ --><!ELEMENT Term (#PCDATA)>
++<!-- .+ --><!ELEMENT Field (#PCDATA)>
++<!-- .+ --><!ELEMENT QueryKey (#PCDATA)>
++<!-- \d+ --><!ELEMENT WebEnv (#PCDATA)>
++<!-- \S+ --><!ELEMENT Explode (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT OP (#PCDATA)>
++<!-- (AND|OR|NOT|RANGE|GROUP) --><!ELEMENT IdList (Id)*>
++<!ELEMENT Translation (From , To)>
++<!ELEMENT TranslationSet (Translation)*>
++<!ELEMENT TermSet (Term , Field , Count , Explode)>
++<!ELEMENT TranslationStack (TermSet | OP)*>
++<!-- Error message tags  --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT OutputMessage (#PCDATA)>
++<!-- .+ --><!ELEMENT QuotedPhraseNotFound (#PCDATA)>
++<!-- .+ --><!ELEMENT PhraseIgnored (#PCDATA)>
++<!-- .+ --><!ELEMENT FieldNotFound (#PCDATA)>
++<!-- .+ --><!ELEMENT PhraseNotFound (#PCDATA)>
++<!-- .+ --><!ELEMENT QueryTranslation (#PCDATA)>
++<!-- .+ --><!ELEMENT ErrorList (PhraseNotFound* , FieldNotFound*)>
++<!ELEMENT WarningList (PhraseIgnored* , QuotedPhraseNotFound* , OutputMessage*)>
++<!-- Response tags --><!ELEMENT eSearchResult (((Count , (RetMax , RetStart , QueryKey? , WebEnv? , IdList , TranslationSet , TranslationStack? , QueryTranslation)?) | ERROR) , ErrorList? , WarningList?)>
++]>
+ <eSearchResult>
+ 	<Count>534</Count>
+ 	<RetMax>20</RetMax>
+Index: libbio-eutilities-perl/t/data/eutils/esearch2.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/esearch2.xml
++++ libbio-eutilities-perl/t/data/eutils/esearch2.xml
+@@ -1,5 +1,36 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eSearchResult PUBLIC "-//NLM//DTD eSearchResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSearch_020511.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eSearchResult [
++<!--    
++                This is the Current DTD for Entrez eSearch
++$Id: eSearch_020511.dtd 85163 2006-06-28 17:35:21Z olegh $
++--><!-- ================================================================= --><!ELEMENT Count (#PCDATA)>
++<!-- \d+ --><!ELEMENT RetMax (#PCDATA)>
++<!-- \d+ --><!ELEMENT RetStart (#PCDATA)>
++<!-- \d+ --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ELEMENT From (#PCDATA)>
++<!-- .+ --><!ELEMENT To (#PCDATA)>
++<!-- .+ --><!ELEMENT Term (#PCDATA)>
++<!-- .+ --><!ELEMENT Field (#PCDATA)>
++<!-- .+ --><!ELEMENT QueryKey (#PCDATA)>
++<!-- \d+ --><!ELEMENT WebEnv (#PCDATA)>
++<!-- \S+ --><!ELEMENT Explode (#PCDATA)>
++<!-- (Y|N) --><!ELEMENT OP (#PCDATA)>
++<!-- (AND|OR|NOT|RANGE|GROUP) --><!ELEMENT IdList (Id)*>
++<!ELEMENT Translation (From , To)>
++<!ELEMENT TranslationSet (Translation)*>
++<!ELEMENT TermSet (Term , Field , Count , Explode)>
++<!ELEMENT TranslationStack (TermSet | OP)*>
++<!-- Error message tags  --><!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT OutputMessage (#PCDATA)>
++<!-- .+ --><!ELEMENT QuotedPhraseNotFound (#PCDATA)>
++<!-- .+ --><!ELEMENT PhraseIgnored (#PCDATA)>
++<!-- .+ --><!ELEMENT FieldNotFound (#PCDATA)>
++<!-- .+ --><!ELEMENT PhraseNotFound (#PCDATA)>
++<!-- .+ --><!ELEMENT QueryTranslation (#PCDATA)>
++<!-- .+ --><!ELEMENT ErrorList (PhraseNotFound* , FieldNotFound*)>
++<!ELEMENT WarningList (PhraseIgnored* , QuotedPhraseNotFound* , OutputMessage*)>
++<!-- Response tags --><!ELEMENT eSearchResult (((Count , (RetMax , RetStart , QueryKey? , WebEnv? , IdList , TranslationSet , TranslationStack? , QueryTranslation)?) | ERROR) , ErrorList? , WarningList?)>
++]>
+ <eSearchResult>
+ 	<Count>534</Count>
+ 	<RetMax>20</RetMax>
+Index: libbio-eutilities-perl/t/data/eutils/espell.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/espell.xml
++++ libbio-eutilities-perl/t/data/eutils/espell.xml
+@@ -1,5 +1,17 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eSpellResult PUBLIC "-//NLM//DTD eSpellResult, 23 November 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSpell.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eSpellResult [
++<!--    
++This is the Current DTD for Entrez eSpell
++$Id:
++--><!-- ================================================================= --><!ELEMENT Original (#PCDATA)>
++<!-- \d+ --><!ELEMENT Replaced (#PCDATA)>
++<!-- \d+ --><!ELEMENT Database (#PCDATA)>
++<!-- \d+ --><!ELEMENT Query (#PCDATA)>
++<!-- \d+ --><!ELEMENT CorrectedQuery (#PCDATA)>
++<!-- \d+ --><!ELEMENT SpelledQuery (Replaced | Original)*>
++<!-- \d+ --><!ELEMENT ERROR (#PCDATA)>
++<!-- \d+ --><!ELEMENT eSpellResult (Database , Query , CorrectedQuery , SpelledQuery , ERROR)>
++]>
+ <eSpellResult>
+ 	<Database>pubmed</Database>
+ 	<Query>Netch AND Mus musclus</Query>
+Index: libbio-eutilities-perl/t/data/eutils/esummary1.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/esummary1.xml
++++ libbio-eutilities-perl/t/data/eutils/esummary1.xml
+@@ -1,5 +1,16 @@
+-<?xml version="1.0" encoding="ISO-8859-1"?>
+-<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 11 May 2002//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
++<?xml version="1.0" encoding="ISO-8859-1" standalone="yes"?>
++<!DOCTYPE eSummaryResult [
++<!--    
++This is the Current DTD for Entrez eSummary version 2
++$Id: eSummary_041029.dtd 49514 2004-10-29 15:52:04Z parantha $
++--><!-- ================================================================= --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ELEMENT Item (#PCDATA | Item)*>
++<!-- .+ --><!ATTLIST Item Name CDATA #REQUIRED>
++<!ATTLIST Item Type (Integer | Date | String | Structure | List | Flags | Qualifier | Enumerator | Unknown) #REQUIRED>
++<!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT DocSum (Id , Item+)>
++<!ELEMENT eSummaryResult (DocSum | ERROR)+>
++]>
+ <eSummaryResult>
+ 
+ <DocSum>
+Index: libbio-eutilities-perl/t/data/eutils/esummary2.xml
+===================================================================
+--- libbio-eutilities-perl.orig/t/data/eutils/esummary2.xml
++++ libbio-eutilities-perl/t/data/eutils/esummary2.xml
+@@ -1,5 +1,16 @@
+-<?xml version="1.0"?>
+-<!DOCTYPE eSummaryResult PUBLIC "-//NLM//DTD eSummaryResult, 29 October 2004//EN" "http://www.ncbi.nlm.nih.gov/entrez/query/DTD/eSummary_041029.dtd">
++<?xml version="1.0" standalone="yes"?>
++<!DOCTYPE eSummaryResult [
++<!--    
++This is the Current DTD for Entrez eSummary version 2
++$Id: eSummary_041029.dtd 49514 2004-10-29 15:52:04Z parantha $
++--><!-- ================================================================= --><!ELEMENT Id (#PCDATA)>
++<!-- \d+ --><!ELEMENT Item (#PCDATA | Item)*>
++<!-- .+ --><!ATTLIST Item Name CDATA #REQUIRED>
++<!ATTLIST Item Type (Integer | Date | String | Structure | List | Flags | Qualifier | Enumerator | Unknown) #REQUIRED>
++<!ELEMENT ERROR (#PCDATA)>
++<!-- .+ --><!ELEMENT DocSum (Id , Item+)>
++<!ELEMENT eSummaryResult (DocSum | ERROR)+>
++]>
+ <eSummaryResult>
+ <DocSum>
+ 	<Id>32049</Id>
diff --git a/debian/patches/series b/debian/patches/series
new file mode 100644
index 0000000..186087d
--- /dev/null
+++ b/debian/patches/series
@@ -0,0 +1 @@
+inline-DTDs-on-testsuite

-- 
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