[med-svn] [cd-hit] 03/05: Updated version 4.6.8 from 'upstream/4.6.8'

[Sascha Steinbiss]

This is an automated email from the git hooks/post-receive script.

satta pushed a commit to branch master
in repository cd-hit.

commit ca5f9a9240e2f83b7ec757baa1009a44c9cc1887
Merge: fd9a4d4 08d8190
Author: Sascha Steinbiss <satta at debian.org>
Date:   Sat Jul 1 10:43:02 2017 +0200

    Updated version 4.6.8 from 'upstream/4.6.8'
    
    with Debian dir 3945d46010d063adbf8bf8de3b17b20bf484d60a

 FET.pl                                             |  109 ++
 README                                             |    5 +-
 cdhit-common.c++                                   |  596 ++++++++--
 cdhit-common.h                                     |   38 +-
 cdhit-est-2d.c++                                   |   17 +-
 cdhit-est.c++                                      |   15 +-
 cdhit-utility.c++                                  |   63 +-
 clstr_list.pl                                      |   89 ++
 clstr_list_sort.pl                                 |   51 +
 doc/cd-hit-otu-miseq-Figure-1.png                  |  Bin 0 -> 119495 bytes
 doc/cdhit-user-guide.pdf                           |  Bin 898823 -> 421458 bytes
 doc/cdhit-user-guide.wiki                          |  432 +++++--
 ...psi-cd-hit-local.pl => psi-cd-hit-local-old.pl} |  245 +++-
 psi-cd-hit/psi-cd-hit-local.pl                     |  549 +++++++--
 psi-cd-hit/{psi-cd-hit.pl => psi-cd-hit-old.pl}    |   72 +-
 psi-cd-hit/psi-cd-hit.pl                           |   82 +-
 usecases/Miseq-16S/16S-ref-db-PE-splice.pl         |  458 ++++++++
 usecases/Miseq-16S/NG-Omics-Miseq-16S.pl           |  117 ++
 usecases/Miseq-16S/NG-Omics-WF.pl                  | 1189 ++++++++++++++++++++
 usecases/Miseq-16S/README                          |  200 ++++
 usecases/Miseq-16S/cd-hit-otu-miseq-PE.pl          |  222 ++++
 usecases/Miseq-16S/clstr_2_OTU_table.pl            |   82 ++
 usecases/Miseq-16S/filter-chimeric-and-small.pl    |  237 ++++
 usecases/Miseq-16S/filter-chimeric-by-ref.pl       |  207 ++++
 usecases/Miseq-16S/filter-nontop-ref.pl            |   51 +
 usecases/Miseq-16S/filter-refonly-cluster.pl       |   34 +
 usecases/Miseq-16S/greengene-ann1.pl               |   75 ++
 usecases/Miseq-16S/pool_samples.pl                 |   78 ++
 28 files changed, 4980 insertions(+), 333 deletions(-)

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