[med-svn] [andi] branch master updated (cf1c1d9 -> eb50dbf)

[Fabian Klötzl]

This is an automated email from the git hooks/post-receive script.

kloetzl-guest pushed a change to branch master
in repository andi.

      from  cf1c1d9   Corrected EDAM annotation file
      adds  dad0e7a   Imported Upstream version 0.10
       new  88a91de   Imported Upstream version 0.11
       new  e0f72de   Updated version 0.11 from 'upstream/0.11'
       new  9294670   changelog: Imported new upstream release
       new  eb50dbf   update copyright information

The 4 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                 |   2 +-
 Makefile.am                 |   9 +--
 README.md                   |   4 +-
 andi-manual.pdf             | Bin 440783 -> 444354 bytes
 configure.ac                |   2 +-
 debian/changelog            |  12 +++-
 debian/copyright            |  10 +--
 docs/andi.1.in              |  16 +++--
 docs/manual/andi-manual.tex |  76 +++++++++++++++-------
 libs/pfasta.c               |   9 ++-
 scripts/_andi               |  40 ++++++++++++
 src/andi.c                  | 155 +++++++++++++++++++++++++-------------------
 src/dist_hack.h             |  22 +++----
 src/esa.c                   |  10 +--
 src/esa.h                   |   4 +-
 src/global.h                |  10 ++-
 src/io.c                    | 137 +++++++++++++++++++++++++++++++++++++--
 src/io.h                    |  22 ++++++-
 src/model.c                 |  11 ++--
 src/process.c               | 113 +++++++-------------------------
 src/sequence.c              |  10 +--
 src/sequence.h              |   5 +-
 test/test_extra.sh          |  12 +++-
 test/test_fasta.cxx         |   2 +-
 24 files changed, 447 insertions(+), 246 deletions(-)
 create mode 100755 scripts/_andi

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