[med-svn] [andi] 02/04: Updated version 0.11 from 'upstream/0.11'

[Fabian Klötzl]

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kloetzl-guest pushed a commit to branch master
in repository andi.

commit e0f72de242c1c907e91e10a55083fc4df76580e9
Merge: cf1c1d9 88a91de
Author: Fabian Klötzl <fabian at kloetzl.info>
Date:   Wed Jul 12 14:48:52 2017 +0200

    Updated version 0.11 from 'upstream/0.11'
    
    with Debian dir 41e50d1c3702245b599a4beb5fc49e540fade701

 .travis.yml                 |   2 +-
 Makefile.am                 |   9 +--
 README.md                   |   4 +-
 andi-manual.pdf             | Bin 440783 -> 444354 bytes
 configure.ac                |   2 +-
 docs/andi.1.in              |  16 +++--
 docs/manual/andi-manual.tex |  76 +++++++++++++++-------
 libs/pfasta.c               |   9 ++-
 scripts/_andi               |  40 ++++++++++++
 src/andi.c                  | 155 +++++++++++++++++++++++++-------------------
 src/dist_hack.h             |  22 +++----
 src/esa.c                   |  10 +--
 src/esa.h                   |   4 +-
 src/global.h                |  10 ++-
 src/io.c                    | 137 +++++++++++++++++++++++++++++++++++++--
 src/io.h                    |  22 ++++++-
 src/model.c                 |  11 ++--
 src/process.c               | 113 +++++++-------------------------
 src/sequence.c              |  10 +--
 src/sequence.h              |   5 +-
 test/test_extra.sh          |  12 +++-
 test/test_fasta.cxx         |   2 +-
 22 files changed, 432 insertions(+), 239 deletions(-)

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