[med-svn] [snakemake] 04/05: refresh patches

[Kevin Murray]

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daube-guest pushed a commit to branch master
in repository snakemake.

commit 31d58de1f34a59a112d93e5c8a78b12a58babb96
Author: Kevin Murray <kdmfoss at gmail.com>
Date:   Tue Jul 18 10:43:17 2017 +1000

    refresh patches
---
 debian/patches/0003-Compat-fix.patch | 18 ++++++++++--------
 1 file changed, 10 insertions(+), 8 deletions(-)

diff --git a/debian/patches/0003-Compat-fix.patch b/debian/patches/0003-Compat-fix.patch
index 1985351..ce5ae36 100644
--- a/debian/patches/0003-Compat-fix.patch
+++ b/debian/patches/0003-Compat-fix.patch
@@ -6,18 +6,20 @@ Subject: Compat fix
  tests/test_symlink_time_handling/Snakefile | 4 ++--
  1 file changed, 2 insertions(+), 2 deletions(-)
 
---- a/tests/test_symlink_time_handling/Snakefile
-+++ b/tests/test_symlink_time_handling/Snakefile
-@@ -40,7 +40,7 @@ shell("touch -h -t {} input_link".format
- shell("ln -s input_link output_link")
- shell("touch -h -t {} output_link".format(timestr(2)))
+Index: snakemake/tests/test_symlink_time_handling/Snakefile
+===================================================================
+--- snakemake.orig/tests/test_symlink_time_handling/Snakefile
++++ snakemake/tests/test_symlink_time_handling/Snakefile
+@@ -42,7 +42,7 @@ if not os.path.exists("input_file"):
+     shell("ln -s input_link output_link")
+     shell("touch -h -t {} output_link".format(timestr(2)))
  
--shell("ls -lR > /dev/stderr")
-+shell("ls -lR >&2")
+-    shell("ls -lR > /dev/stderr")
++    shell("ls -lR >&2")
  
  rule main:
      output: "time_diff.txt"
-@@ -55,7 +55,7 @@ rule main:
+@@ -57,7 +57,7 @@ rule main:
              os.stat("input_file", follow_symlinks=False).st_mtime
          ) / (60*60) )
          # I expect the result "4 1"

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