[med-svn] [python-pybedtools] branch master updated (0948def -> 22da642)

Andreas Tille tille at debian.org
Wed Jul 19 19:35:40 UTC 2017


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tille pushed a change to branch master
in repository python-pybedtools.

      from  0948def   Upload to unstable
       new  bb15845   New upstream version 0.7.10
       new  799584b   Updated version 0.7.10 from 'upstream/0.7.10'
       new  bbbb9e5   New upstream version
       new  a300499   Build-Depends: python3-all-dev
       new  5bd42ef   Adapt patches
       new  2c0850c   Standards-Version: 4.0.0 (no changes needed)
       new  9c55d29   do not uselessly parse d/changelog
       new  22da642   Hardening

The 8 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 .travis.yml                                        |   7 +-
 condatest.sh                                       |  66 ++++++-----
 debian/changelog                                   |  13 +++
 debian/control                                     |   5 +-
 debian/patches/disable-test-156                    |  68 +++---------
 debian/patches/disable-write-version               |  16 +--
 debian/patches/enable-package-data                 |   6 +-
 debian/patches/rename-scripts                      |   6 +-
 debian/rules                                       |   5 +-
 docs/source/_static/custom.css                     |   3 +
 .../autodocs/pybedtools.contrib.plotting.Track.rst |  10 +-
 docs/source/changes.rst                            |  28 +++++
 docs/source/conf.py                                |   2 +-
 docs/source/topical-saving.rst                     |  43 +++++---
 optional-requirements.txt                          |   6 +
 pybedtools/bedtool.py                              | 108 ++++++++++++++++--
 pybedtools/contrib/bigwig.py                       |  52 ++++++++-
 pybedtools/contrib/long_range_interaction.py       |   6 +-
 pybedtools/settings.py                             |   1 +
 pybedtools/test/data/gdc.othersort.bam             | Bin 0 -> 275 bytes
 pybedtools/test/mpl-expected.png                   | Bin 31626 -> 24450 bytes
 pybedtools/test/test1.py                           | 121 +++++++++++++++------
 pybedtools/version.py                              |  10 +-
 requirements.txt                                   |   6 +-
 setup.py                                           |  37 ++++---
 requirements.txt => test-requirements.txt          |   3 +-
 26 files changed, 433 insertions(+), 195 deletions(-)
 create mode 100644 docs/source/_static/custom.css
 create mode 100644 optional-requirements.txt
 create mode 100644 pybedtools/test/data/gdc.othersort.bam
 copy requirements.txt => test-requirements.txt (57%)

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