[med-svn] [htslib] 10/10: Relase 1.5: Solstice

[Andreas Tille]

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tille pushed a commit to annotated tag 1.5
in repository htslib.

commit 49fdfbda20acbd73303df3c7fef84f2d972c5f8d
Merge: 6c06833 fba943d
Author: Valeriu Ohan <vo2 at sanger.ac.uk>
Date:   Tue Jun 20 13:40:28 2017 +0100

    Relase 1.5: Solstice

 Makefile             |  17 +-
 NEWS                 |  15 ++
 bgzf.c               | 165 ++++++--------------
 configure.ac         |   4 +
 cram/cram_codecs.c   |  29 ++--
 cram/cram_decode.c   |  10 +-
 cram/cram_index.c    |  39 +++--
 cram/cram_io.c       |  18 +--
 cram/cram_io.h       |   6 +
 cram/mFILE.c         |  40 -----
 cram/vlen.c          | 430 ---------------------------------------------------
 cram/vlen.h          |  50 ------
 cram/zfio.c          | 154 ------------------
 cram/zfio.h          |  62 --------
 faidx.c              | 106 +++++--------
 hfile.c              |  39 ++++-
 hfile_internal.h     |  21 +++
 hts.c                | 159 ++++++++++++++-----
 htsfile.1            |   2 +-
 htslib.mk            |   7 +-
 htslib/hts.h         |   6 +-
 htslib/hts_log.h     |  93 +++++++++++
 htslib/sam.h         |   6 +-
 htslib/vcf.h         |   2 +-
 htslib_vars.mk       |   3 +-
 knetfile.c           |  25 +--
 multipart.c          |  11 +-
 regidx.c             |  16 +-
 sam.c                | 114 ++++++--------
 synced_bcf_reader.c  |  46 +++---
 tabix.1              |   2 +-
 tbx.c                |  11 +-
 test/test-logging.pl |  96 ++++++++++++
 test/test.pl         |  12 ++
 vcf.c                | 245 +++++++++++++++--------------
 vcfutils.c           |  80 +++++-----
 36 files changed, 821 insertions(+), 1320 deletions(-)

diff --cc Makefile
index bbba897,471133e..9a44b62
--- a/Makefile
+++ b/Makefile
@@@ -92,7 -92,7 +92,7 @@@ HTSPREFIX 
  include htslib_vars.mk
  
  
--PACKAGE_VERSION = 1.4.1
++PACKAGE_VERSION = 1.5
  LIBHTS_SOVERSION = 2
  
  
diff --cc htsfile.1
index d360cb0,d360cb0..732f057
--- a/htsfile.1
+++ b/htsfile.1
@@@ -1,4 -1,4 +1,4 @@@
--.TH htsfile 1 "08 May 2017" "htslib-1.4.1" "Bioinformatics tools"
++.TH htsfile 1 "21 June 2017" "htslib-1.5" "Bioinformatics tools"
  .SH NAME
  htsfile \- identify high-throughput sequencing data files
  .\"
diff --cc tabix.1
index 4fd20a0,4fd20a0..ea5d5e5
--- a/tabix.1
+++ b/tabix.1
@@@ -1,4 -1,4 +1,4 @@@
--.TH tabix 1 "08 May 2017" "htslib-1.4.1" "Bioinformatics tools"
++.TH tabix 1 "21 June 2017" "htslib-1.5" "Bioinformatics tools"
  .SH NAME
  .PP
  bgzip \- Block compression/decompression utility

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