[med-svn] [htslib] 09/10: Minor reformatting.

[Andreas Tille]

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tille pushed a commit to branch master
in repository htslib.

commit 68cd7e53b4340f38e98b0621c9a3a37e253992e9
Author: Anders Kaplan <anders.kaplan at magasin1.se>
Date:   Mon Jul 3 23:09:19 2017 +0200

    Minor reformatting.
---
 cram/cram_codecs.c |  2 +-
 cram/cram_decode.c | 16 ++++++++--------
 cram/cram_encode.c |  2 +-
 cram/cram_io.c     |  2 +-
 realn.c            |  2 +-
 sam.c              |  2 +-
 6 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/cram/cram_codecs.c b/cram/cram_codecs.c
index 4fe9574..758de44 100644
--- a/cram/cram_codecs.c
+++ b/cram/cram_codecs.c
@@ -239,7 +239,7 @@ static inline unsigned int get_bits_MSB(cram_block *block, int nbits) {
  * for it elsewhere.)
  */
 static int store_bits_MSB(cram_block *block, unsigned int val, int nbits) {
-    /* fprintf(stderr, " store_bits: %02x %d\n", val, nbits); */
+    //fprintf(stderr, " store_bits: %02x %d\n", val, nbits);
 
     /*
      * Use slow mode until we tweak the huffman generator to never generate
diff --git a/cram/cram_decode.c b/cram/cram_decode.c
index 513cb51..9571326 100644
--- a/cram/cram_decode.c
+++ b/cram/cram_decode.c
@@ -2741,11 +2741,11 @@ int cram_decode_slice(cram_fd *fd, cram_container *c, cram_slice *s,
     // As we grow blocks we overallocate by up to 50%. So shrink
     // back to their final sizes here.
     //
-//    fprintf(stderr, "%d %d // %d %d // %d %d // %d %d\n",
-//    	    (int)s->seqs_blk->byte, (int)s->seqs_blk->alloc, 
-//    	    (int)s->qual_blk->byte, (int)s->qual_blk->alloc, 
-//    	    (int)s->name_blk->byte, (int)s->name_blk->alloc, 
-//    	    (int)s->aux_blk->byte,  (int)s->aux_blk->alloc);
+    //fprintf(stderr, "%d %d // %d %d // %d %d // %d %d\n",
+    //	    (int)s->seqs_blk->byte, (int)s->seqs_blk->alloc,
+    //	    (int)s->qual_blk->byte, (int)s->qual_blk->alloc,
+    //	    (int)s->name_blk->byte, (int)s->name_blk->alloc,
+    //	    (int)s->aux_blk->byte,  (int)s->aux_blk->alloc);
     BLOCK_RESIZE_EXACT(s->seqs_blk, BLOCK_SIZE(s->seqs_blk)+1);
     BLOCK_RESIZE_EXACT(s->qual_blk, BLOCK_SIZE(s->qual_blk)+1);
     BLOCK_RESIZE_EXACT(s->name_blk, BLOCK_SIZE(s->name_blk)+1);
@@ -3121,9 +3121,9 @@ static cram_slice *cram_next_slice(cram_fd *fd, cram_container **cp) {
 	hts_tpool_result *res;
 	cram_decode_job *j;
 	
-//	fprintf(stderr, "Thread pool len = %d, %d\n",
-//		hts_tpool_results_queue_len(fd->rqueue),
-//		hts_tpool_results_queue_sz(fd->rqueue));
+	//fprintf(stderr, "Thread pool len = %d, %d\n",
+	//	hts_tpool_results_queue_len(fd->rqueue),
+	//	hts_tpool_results_queue_sz(fd->rqueue));
 
 	if (fd->ooc && hts_tpool_process_empty(fd->rqueue))
 	    return NULL;
diff --git a/cram/cram_encode.c b/cram/cram_encode.c
index e667d21..2d78732 100644
--- a/cram/cram_encode.c
+++ b/cram/cram_encode.c
@@ -1446,7 +1446,7 @@ int cram_encode_container(cram_fd *fd, cram_container *c) {
     h->codecs[DS_CF] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_CF]),
 					 c->stats[DS_CF], E_INT, NULL,
 					 fd->version);
-//    fprintf(stderr, "=== RN ===\n");
+    //fprintf(stderr, "=== RN ===\n");
 //    h->codecs[DS_RN] = cram_encoder_init(cram_stats_encoding(fd, c->stats[DS_RN]),
 //				    c->stats[DS_RN], E_BYTE_ARRAY, NULL,
 //				    fd->version);
diff --git a/cram/cram_io.c b/cram/cram_io.c
index d41e76c..bf50130 100644
--- a/cram/cram_io.c
+++ b/cram/cram_io.c
@@ -786,7 +786,7 @@ cram_block *cram_read_block(cram_fd *fd) {
     if (-1 == itf8_decode_crc(fd, &b->comp_size, &crc))   { free(b); return NULL; }
     if (-1 == itf8_decode_crc(fd, &b->uncomp_size, &crc)) { free(b); return NULL; }
 
-    //    fprintf(stderr, "  method %d, ctype %d, cid %d, csize %d, ucsize %d\n",
+    //fprintf(stderr, "  method %d, ctype %d, cid %d, csize %d, ucsize %d\n",
     //	    b->method, b->content_type, b->content_id, b->comp_size, b->uncomp_size);
 
     if (b->method == RAW) {
diff --git a/realn.c b/realn.c
index d856f3c..a33acde 100644
--- a/realn.c
+++ b/realn.c
@@ -78,7 +78,7 @@ int sam_cap_mapq(bam1_t *b, const char *ref, int ref_len, int thres)
     if (t > thres) return -1;
     if (t < 0) t = 0;
     t = sqrt((thres - t) / thres) * thres;
-//  fprintf(stderr, "%s %lf %d\n", bam_get_qname(b), t, q);
+    //fprintf(stderr, "%s %lf %d\n", bam_get_qname(b), t, q);
     return (int)(t + .499);
 }
 
diff --git a/sam.c b/sam.c
index 5e9c20d..7028b92 100644
--- a/sam.c
+++ b/sam.c
@@ -1852,7 +1852,7 @@ static inline int resolve_cigar2(bam_pileup1_t *p, int32_t pos, cstate_t *s)
     uint32_t *cigar = bam_get_cigar(b);
     int k;
     // determine the current CIGAR operation
-//  fprintf(stderr, "%s\tpos=%d\tend=%d\t(%d,%d,%d)\n", bam_get_qname(b), pos, s->end, s->k, s->x, s->y);
+    //fprintf(stderr, "%s\tpos=%d\tend=%d\t(%d,%d,%d)\n", bam_get_qname(b), pos, s->end, s->k, s->x, s->y);
     if (s->k == -1) { // never processed
         if (c->n_cigar == 1) { // just one operation, save a loop
           if (_cop(cigar[0]) == BAM_CMATCH || _cop(cigar[0]) == BAM_CEQUAL || _cop(cigar[0]) == BAM_CDIFF) s->k = 0, s->x = c->pos, s->y = 0;

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