[med-svn] [physamp] branch master updated (3a1a435 -> be08b9f)

[Julien Dutheil]

This is an automated email from the git hooks/post-receive script.

jdutheil-guest pushed a change to branch master
in repository physamp.

      from  3a1a435   Adjust versioned Build-Depends
       new  64fac36   First version of bppalnoptim.
       new  3e9fa13   Added cmake files in doc and man.
       new  2b71ea8   Initial fix for standalone version.
       new  7974664   Ouput of filtered sequences is now optional.
       new  b30d9e7   Added license files (GPL3).
       new  750a1c4   Added man pages.
       new  6285e23   Added first draft of manual + example files.
       new  5806000   Release 0.1.0.
       new  e6565f2   Fixed dir name.
       new  0f09f72   Automatic arch.
       new  b4570b5   Added new stop criterion (nb sites). Memory required for distance matrix is also shown.
       new  fa922ab   Modifs for revision.
       new  dc04ac1   Documentation updated.
       new  f6f81d5   Fixed dist version nb.
       new  35dbd17   Added ChangeLog
       new  804d620   Version 0.2.0.
       new  c3c87eb   Merge branch 'master' of biopp.univ-montp2.fr:/git/physamp
       new  51ad435   Added example file for bppphysamp.
       new  39feaed   Compatibility update
       new  a55bf2c   Added bppPhySamp.
       new  dbd0466   Initial commit
       new  b481396   Merge branch 'master' of https://github.com/jydu/physamp
       new  1d59ff2   Fixed man pages.
       new  3642f5c   Set theme jekyll-theme-time-machine
       new  7effeb6   Create physamp.md
       new  d4734bb   Merge branch 'master' of https://github.com/jydu/physamp
       new  065606b   Moved all documents from doc to docs.
       new  186574e   Renamed index page.
       new  bdba536   Update index.md
       new  6bb6597   Update index.md
       new  cb31b2e   Set theme jekyll-theme-slate
       new  5c86027   Update index.md
       new  8381096   Update index.md
       new  a574878   Release 1.0.0.
       new  ed52064   Merge branch 'master' of biopp.univ-montp2.fr:/git/physamp
       new  5c5e523   Fixed spec file.
       new  c38a030   Version 1.0.1.
       new  5a52fb2   Fixed deprecated auto_ptr
       new  8906dde   Merge branch 'master' of https://github.com/jydu/physamp into upstream
       new  22859e0   Fixed CPAck version.
       new  ce05445   Merge branch 'master' of https://github.com/jydu/physamp into upstream
       new  5725016   Merge branch 'upstream'
       new  be08b9f   Version 1.0.2.

The 43 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 CMakeLists.txt                 |  4 ++--
 debian/changelog               |  8 ++++++--
 physamp/AlignmentOptimizer.cpp | 19 ++++++++++---------
 physamp/CMakeLists.txt         |  5 +++--
 physamp/PhyloSampler.cpp       |  4 ++--
 5 files changed, 23 insertions(+), 17 deletions(-)

-- 
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