[med-svn] [r-bioc-mergeomics] 03/03: Merge tag 'upstream/1.4.0'
Dylan Aïssi
bob.dybian-guest at moszumanska.debian.org
Mon Jul 24 19:49:46 UTC 2017
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bob.dybian-guest pushed a commit to branch master
in repository r-bioc-mergeomics.
commit e06bf9a75080c650946b89e1ebe4b80eb02d778b
Merge: b2c5b10 34a5e2d
Author: Dylan Aïssi <bob.dybian at gmail.com>
Date: Mon Jul 24 21:49:06 2017 +0200
Merge tag 'upstream/1.4.0'
Upstream version 1.4.0
DESCRIPTION | 4 +-
R/cle.LS.R | 498 ++++++++++++++++++++-----------------
build/vignette.rds | Bin 233 -> 231 bytes
inst/doc/Mergeomics.Rnw | 8 +-
inst/doc/Mergeomics.pdf | Bin 265347 -> 265168 bytes
inst/unitTests/test_ssea.analyze.R | 4 +-
man/MSEA.KDA.onestep.Rd | 8 +-
man/Mergeomics-package.Rd | 8 +-
man/kda.analyze.Rd | 8 +-
man/kda.analyze.exec.Rd | 16 +-
man/kda.analyze.simulate.Rd | 16 +-
man/kda.analyze.test.Rd | 16 +-
man/kda.configure.Rd | 8 +-
man/kda.finish.Rd | 8 +-
man/kda.finish.estimate.Rd | 8 +-
man/kda.finish.save.Rd | 8 +-
man/kda.finish.summarize.Rd | 8 +-
man/kda.finish.trim.Rd | 8 +-
man/kda.prepare.Rd | 16 +-
man/kda.prepare.overlap.Rd | 8 +-
man/kda.prepare.screen.Rd | 8 +-
man/kda.start.Rd | 16 +-
man/kda.start.edges.Rd | 8 +-
man/kda.start.identify.Rd | 8 +-
man/kda.start.modules.Rd | 8 +-
man/kda2cytoscape.Rd | 8 +-
man/kda2cytoscape.colorize.Rd | 8 +-
man/kda2cytoscape.colormap.Rd | 8 +-
man/kda2cytoscape.drivers.Rd | 8 +-
man/kda2cytoscape.edges.Rd | 8 +-
man/kda2cytoscape.exec.Rd | 8 +-
man/kda2cytoscape.identify.Rd | 8 +-
man/kda2himmeli.Rd | 8 +-
man/kda2himmeli.colorize.Rd | 8 +-
man/kda2himmeli.colormap.Rd | 8 +-
man/kda2himmeli.drivers.Rd | 8 +-
man/kda2himmeli.edges.Rd | 8 +-
man/kda2himmeli.exec.Rd | 8 +-
man/kda2himmeli.identify.Rd | 8 +-
man/ssea.analyze.Rd | 25 +-
man/ssea.analyze.observe.Rd | 10 +-
man/ssea.analyze.randgenes.Rd | 51 +++-
man/ssea.analyze.randloci.Rd | 10 +-
man/ssea.analyze.simulate.Rd | 29 ++-
man/ssea.analyze.statistic.Rd | 8 +-
man/ssea.control.Rd | 10 +-
man/ssea.finish.Rd | 10 +-
man/ssea.finish.details.Rd | 10 +-
man/ssea.finish.fdr.Rd | 10 +-
man/ssea.finish.genes.Rd | 10 +-
man/ssea.meta.Rd | 8 +-
man/ssea.prepare.Rd | 10 +-
man/ssea.prepare.counts.Rd | 10 +-
man/ssea.prepare.structure.Rd | 10 +-
man/ssea.start.Rd | 8 +-
man/ssea.start.configure.Rd | 10 +-
man/ssea.start.identify.Rd | 8 +-
man/ssea.start.relabel.Rd | 10 +-
man/ssea2kda.Rd | 8 +-
man/ssea2kda.analyze.Rd | 10 +-
man/ssea2kda.import.Rd | 10 +-
man/tool.aggregate.Rd | 8 +-
man/tool.cluster.Rd | 10 +-
man/tool.cluster.static.Rd | 8 +-
man/tool.coalesce.Rd | 10 +-
man/tool.coalesce.exec.Rd | 8 +-
man/tool.coalesce.find.Rd | 8 +-
man/tool.coalesce.merge.Rd | 8 +-
vignettes/Mergeomics.Rnw | 8 +-
69 files changed, 634 insertions(+), 537 deletions(-)
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