[med-svn] [fastx-toolkit] 01/01: add tests for fastx_quality_stats and fastq_quality_filter

[Nadiya Sitdykova]

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rovenskasa-guest pushed a commit to branch master
in repository fastx-toolkit.

commit e15a1b1b857dedb57822c59bed3d60e6ac84d45b
Author: Nadiya Sitdykova <rovenskasa at gmail.com>
Date:   Mon Jun 5 20:43:01 2017 -0400

    add tests for fastx_quality_stats and fastq_quality_filter
---
 debian/changelog           |  1 +
 debian/tests/run-unit-test | 14 +++++++-------
 2 files changed, 8 insertions(+), 7 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 3748466..487c9cd 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -4,6 +4,7 @@ fastx-toolkit (0.0.14-4) unstable; urgency=low
 
   [ Nadiya Sitdykova ]
   * Add autopkgtest test-suite
+  * Add tests for fastx_quality_stats and fastq_quality_filter
 
  -- Nadiya Sitdykova <rovenskasa at gmail.com>  Mon, 05 Jun 2017 17:55:44 -0400
 
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
index 93684aa..590613b 100644
--- a/debian/tests/run-unit-test
+++ b/debian/tests/run-unit-test
@@ -26,8 +26,8 @@ fastq_to_fasta -i fastq_to_fasta1.fastq -r -n -o out
 check fastq_to_fasta1b.out out
 
 echo "testing fastx_quality_stats"
-fastx_quality_stats -i fastq_stats1.fastq -o out
-#check fastq_stats1.out out
+fastx_quality_stats -Q64 -i fastq_stats1.fastq -o out
+check fastq_stats1.out out
 
 echo "testing fastx_clipper"
 fastx_clipper -i fastx_clipper1.fastq -a CAATTGGTTAATCCCCCTATATA -c -o out
@@ -52,11 +52,11 @@ check fastx_artifacts1.out out
 fastx_artifacts_filter -i fastx_artifacts2.fastq -o out
 check fastx_artifacts2.out out
 
-#echo "testing fastq_quality_filter"
-#fastq_quality_filter -i fastq_qual_filter1.fastq -q 33 -p 100 -o out
-#check fastx_qual_filter1a.out out
-#fastq_quality filter -i fastq_qual_filter1.fastq -q 20 -p 100 -o out
-#check fastq_qual_filter1b.out out
+echo "testing fastq_quality_filter"
+fastq_quality_filter -Q64 -i fastq_qual_filter1.fastq -q 33 -p 100 -o out
+check fastx_qual_filter1a.out out
+fastq_quality filter -Q64 -i fastq_qual_filter1.fastq -q 20 -p 100 -o out
+check fastq_qual_filter1b.out out
 
 echo "testing fastx_reverse_complement"
 fastx_reverse_complement -i fastx_rev_comp1.fasta -o out

-- 
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