[med-svn] [harvest-tools] branch debian/jessie-backports updated (b55560d -> f8e278d)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch debian/jessie-backports
in repository harvest-tools.

      from  b55560d   Rebuild for jessie-backports
      adds  a2f141c   New upstream version 1.3
      adds  99b1e83   Merge tag 'upstream/1.3'
      adds  4b17fba   New upstream version
      adds  05bcbb3   cme fix dpkg-control
      adds  fecbc6f   Adapt patches
      adds  14d98c4   Upload to unstable
       new  0849701   Merge branch 'master' into debian/jessie-backports
       new  f8e278d   Rebuild for jessie-backports

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 INSTALL.txt                         |  38 +++++--
 Makefile.in                         |   6 +-
 README.md                           |  18 ++--
 configure.ac                        |   2 +-
 debian/changelog                    |  13 +++
 debian/control                      |   2 +-
 debian/patches/remove_memwrap.patch |  16 +--
 src/harvest/AnnotationList.cpp      |  27 ++++-
 src/harvest/AnnotationList.h        |   7 +-
 src/harvest/HarvestIO.cpp           |  42 +++++++-
 src/harvest/HarvestIO.h             |   3 +-
 src/harvest/LcbList.cpp             | 121 +++++++++++++++++++++
 src/harvest/LcbList.h               |   1 +
 src/harvest/PhylogenyTree.cpp       |  43 ++++++++
 src/harvest/PhylogenyTree.h         |   1 +
 src/harvest/PhylogenyTreeNode.cpp   |   5 +-
 src/harvest/PhylogenyTreeNode.h     |   5 +-
 src/harvest/ReferenceList.cpp       |  14 +--
 src/harvest/ReferenceList.h         |  12 +--
 src/harvest/VariantList.cpp         | 210 +++++++++++++++++++++++++++++++-----
 src/harvest/VariantList.h           | 139 +++++++++++++++++++++++-
 src/harvest/harvest.cpp             | 141 ++++++++++++++++++++++--
 22 files changed, 768 insertions(+), 98 deletions(-)
 mode change 100644 => 100755 src/harvest/HarvestIO.cpp
 mode change 100644 => 100755 src/harvest/LcbList.cpp
 mode change 100644 => 100755 src/harvest/harvest.cpp

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