[med-svn] r23778 - in trunk/packages/R/r-cran-adephylo/branches/jessie-backports: . 1.1-10-2~bpo8+1 1.1-10-2~bpo8+1/tests

Andreas Tille tille at moszumanska.debian.org
Tue Jun 6 19:09:21 UTC 2017 

Author: tille
Date: 2017-06-06 19:09:20 +0000 (Tue, 06 Jun 2017)
New Revision: 23778

Added:
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/
Modified:
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/README.test
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/changelog
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/compat
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/control
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/copyright
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/rules
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/tests/run-unit-test
   trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/watch
Log:
Tagged 1.1-10-2~bpo8+1


Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/README.test
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/README.test	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/README.test	2017-06-06 19:09:20 UTC (rev 23778)
@@ -3,7 +3,6 @@
 
 This package can be tested by running the provided test:
 
-cd tests
-LC_ALL=C R --no-save < testthat.R
+   sh run-unit-test
 
 in order to confirm its integrity.

Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/changelog
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/changelog	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/changelog	2017-06-06 19:09:20 UTC (rev 23778)
@@ -1,3 +1,27 @@
+r-cran-adephylo (1.1-10-2~bpo8+1) jessie-backports; urgency=medium
+
+  * Rebuild for jessie-backports.
+
+ -- Andreas Tille <tille at debian.org>  Tue, 06 Jun 2017 19:11:21 +0200
+
+r-cran-adephylo (1.1-10-2) unstable; urgency=medium
+
+  * Fix autopkgtest
+
+ -- Andreas Tille <tille at debian.org>  Sun, 15 Jan 2017 21:12:39 +0100
+
+r-cran-adephylo (1.1-10-1) unstable; urgency=medium
+
+  * New upstream version
+  * Fix cut-n-pasto (thanks to Michael Hudson-Doyle)
+  * Convert to dh-r
+  * Canonical homepage for CRAN
+  * Update d/copyright
+  * d/watch: version=4
+  * debhelper 10
+
+ -- Andreas Tille <tille at debian.org>  Tue, 20 Dec 2016 11:19:17 +0100
+
 r-cran-adephylo (1.1-6-1~bpo8+1) jessie-backports; urgency=medium
 
   * Rebuild for jessie-backports.

Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/compat
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/compat	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/compat	2017-06-06 19:09:20 UTC (rev 23778)
@@ -1 +1 @@
-9
+10

Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/control
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/control	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/control	2017-06-06 19:09:20 UTC (rev 23778)
@@ -3,8 +3,8 @@
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
-Build-Depends: debhelper (>= 9),
-               cdbs,
+Build-Depends: debhelper (>= 10),
+               dh-r,
                r-base-dev,
                r-cran-ade4,
                r-cran-ape,
@@ -13,17 +13,15 @@
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-adephylo/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-adephylo/trunk/
-Homepage: https://cran.r-project.org/web/packages/adephylo/
+Homepage: https://cran.r-project.org/package=adephylo
 
 Package: r-cran-adephylo
 Architecture: any
 Depends: ${misc:Depends},
          ${shlibs:Depends},
-         ${R:Depends},
-         r-cran-ade4,
-         r-cran-ape,
-         r-cran-phylobase,
-         r-cran-adegenet
+         ${R:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R exploratory analyses for the phylogenetic comparative method
  This GNU R package provides multivariate tools to analyze comparative
  data, i.e. a phylogeny and some traits measured for each taxa.

Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/copyright
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/copyright	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/copyright	2017-06-06 19:09:20 UTC (rev 23778)
@@ -1,10 +1,12 @@
-Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Contact: Thibaut Jombart <t.jombart at imperial.ac.uk>
-Source: https://cran.r-project.org/web/packages/adegenet/
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Contact: Stéphane Dray <stephane.dray at univ-lyon1.fr>
+Upstream-Name: adephylo
+Source: https://cran.r-project.org/package=adephylo
 
 Files: *
 Copyright: 2013-2016 Thibaut Jombart <thibautjombart at gmail.com>,
-                     Stephane Dray
+                     Stephane Dray <stephane.dray at univ-lyon1.fr>,
+                     Anders Ellern Bilgrau
 License: GPL-2+
 
 Files: debian/*

Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/rules
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/rules	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/rules	2017-06-06 19:09:20 UTC (rev 23778)
@@ -1,3 +1,4 @@
 #!/usr/bin/make -f
 
-include /usr/share/R/debian/r-cran.mk
+%:
+	dh $@ --buildsystem R

Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/tests/run-unit-test
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/tests/run-unit-test	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/tests/run-unit-test	2017-06-06 19:09:20 UTC (rev 23778)
@@ -7,7 +7,7 @@
   trap "rm -rf $ADTTMP" 0 INT QUIT ABRT PIPE TERM
 fi
 cd $ADTTMP
-cp /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
+cp -a /usr/share/doc/$pkg/examples/vignettes/* $ADTTMP
 find . -name "*.gz" -exec gunzip \{\} \;
 for rnw in `ls *.[rRS]nw` ; do
 rfile=`echo $rnw | sed 's/\.[rRS]nw/.R/'`

Modified: trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/watch
===================================================================
--- trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-6-1~bpo8+1/watch	2017-05-29 13:51:34 UTC (rev 23773)
+++ trunk/packages/R/r-cran-adephylo/branches/jessie-backports/1.1-10-2~bpo8+1/watch	2017-06-06 19:09:20 UTC (rev 23778)
@@ -1,3 +1,3 @@
-version=3
+version=4
 http://cran.r-project.org/src/contrib/adephylo_([-0-9\.]*).tar.gz

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