[med-svn] [fastx-toolkit] 02/03: additional tests

[Nadiya Sitdykova]

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rovenskasa-guest pushed a commit to branch master
in repository fastx-toolkit.

commit 593eae331c7057f02bc240f5dc4a24b901f2c7a0
Author: Nadiya Sitdykova <rovenskasa at gmail.com>
Date:   Tue Jun 6 15:54:06 2017 -0400

    additional tests
---
 debian/changelog           |  1 +
 debian/tests/run-unit-test | 21 +++++++++++++++++++++
 2 files changed, 22 insertions(+)

diff --git a/debian/changelog b/debian/changelog
index 3488053..9cbc0f3 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -6,6 +6,7 @@ fastx-toolkit (0.0.14-4) unstable; urgency=low
   * Add autopkgtest test-suite
   * Add tests for fastx_quality_stats and fastq_quality_filter
   * Fix typos in fastq_quality_filter test
+  * Additional tests
 
  -- Nadiya Sitdykova <rovenskasa at gmail.com>  Mon, 05 Jun 2017 17:55:44 -0400
 
diff --git a/debian/tests/run-unit-test b/debian/tests/run-unit-test
index 373a03e..89530d3 100644
--- a/debian/tests/run-unit-test
+++ b/debian/tests/run-unit-test
@@ -75,3 +75,24 @@ fasta_nucleotide_changer -i fasta_nuc_changer1.fasta -r -o out
 check fasta_nuc_changer1.out out
 fasta_nucleotide_changer -i fasta_nuc_changer2.fasta -d -o out
 check fasta_nuc_changer2.out out
+
+echo "testing fastq_masker"
+fastq_masker -Q64 -i fastq_masker.fastq -q 29 -r x -o out
+check fastq_masker.out out
+
+echo "testing fastq_quality_converter"
+fastq_quality_converter -Q64 -i fastq_qual_conv1.fastq -n -o out
+check fastq_qual_conv1.out out
+fastq_quality_converter -Q64 -i fastq_qual_conv1.fastq -a -o out
+check fastq_qual_conv1a.out out
+fastq_quality_converter -Q64 -i fastq_qual_conv2.fastq -a -o out
+check fastq_qual_conv2.out out
+fastq_quality_converter -Q64 -i fastq_qual_conv2.fastq -n -o out
+check fastq_qual_conv2n.out out
+echo "testing fastq_quality_trimmer"
+fastq_quality_trimmer -Q64 -i fastq_quality_trimmer.fastq -t 30 -l 16 -o out
+check fastq_quality_trimmer.out out
+
+echo "testing fastx_uncollapser"
+fastx_uncollapser -i fasta_uncollapser1.fasta -o out
+check fasta_uncollapser1.out out

-- 
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