[med-svn] [proteinortho] branch debian/jessie-backports updated (642b67d -> a4656fa)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch debian/jessie-backports
in repository proteinortho.

      from  642b67d   Backport to Jessie
      adds  961d8d2   make better use of uscan options
      adds  d8a5c6c   Imported Upstream version 5.12+dfsg
      adds  13a6890   Merge tag 'upstream/5.12+dfsg'
      adds  249ceee   New upstream version
      adds  c29c3ae   cme fix dpkg-control
      adds  719a346   Adapt patches
      adds  1f05982   Fix C-Syntax
      adds  2c98bed   Running into next build issue: File po_tree.pl is missing
      adds  b8911af   Apply fix from upstream to enable building the package
      adds  b44d26a   Remove another two binaries from upstream source
      adds  34ca2d5   Imported Upstream version 5.12+dfsg
      adds  d227ed0   Merge tag 'upstream/5.12+dfsg'
      adds  8235a06   Better hardening
      adds  a6e05f7   Imported Upstream version 5.13+dfsg
      adds  ae56919   Merge tag 'upstream/5.13+dfsg'
      adds  a99b730   New upstream version (all patches applied upstream)
      adds  35b9c34   cme fix dpkg-control
      adds  546fac3   Upload to unstable
      adds  7c6519f   Imported Upstream version 5.15+dfsg
      adds  c474138   Merge tag 'upstream/5.15+dfsg'
      adds  0e80097   New upstream version
      adds  e78e063   Imported Upstream version 5.15+dfsg
      adds  4dadf0f   Merge tag 'upstream/5.15+dfsg'
      adds  1c91c01   Upload to unstable
       new  6181a14   Merge branch 'master' into debian/jessie-backports
       new  a4656fa   Rebuild for jessie-backports

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 Makefile                       |  14 +-
 basic-types.h                  |  58 +++++
 debian/changelog               |  30 +++
 debian/control                 |   4 +-
 debian/copyright               |   2 +
 debian/patches/hardening.patch |  25 ---
 debian/patches/series          |   1 -
 debian/rules                   |  11 +-
 debian/watch                   |   2 +-
 ffadj_mcs.py                   |   6 +-
 manual.html                    |  21 +-
 po2tree.pl                     | 161 ++++++++++++++
 po_tree.c                      | 484 +++++++++++++++++++++++++++++++++++++++++
 proteinortho5.pl               | 100 +++++----
 proteinortho5_clean_edges.cpp  | 136 ------------
 proteinortho5_clustering.cpp   | 233 ++++++++++++++++----
 16 files changed, 1018 insertions(+), 270 deletions(-)
 create mode 100644 basic-types.h
 delete mode 100644 debian/patches/hardening.patch
 delete mode 100644 debian/patches/series
 create mode 100755 po2tree.pl
 create mode 100644 po_tree.c
 delete mode 100644 proteinortho5_clean_edges.cpp

-- 
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