[med-svn] [ncbi-vdb] 01/05: Merge branch 'master' into debian/jessie-backports
Andreas Tille
tille at debian.org
Wed Jun 7 19:29:59 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch debian/jessie-backports
in repository ncbi-vdb.
commit d24b3a66515576b8442de45ddeb14556030b3fe2
Merge: dd29988 b36a1ec
Author: Andreas Tille <tille at debian.org>
Date: Wed Jun 7 13:57:44 2017 +0200
Merge branch 'master' into debian/jessie-backports
.gitignore | 1 +
CHANGES | 60 -
CHANGES.md | 26 +
README | 55 -
README.md | 25 +-
build/Makefile.gcc | 4 +-
build/Makefile.install | 28 +-
build/Makefile.vers | 2 +-
build/ld.linux.exe_cmd.sh | 1 +
debian/changelog | 35 +
debian/compat | 2 +-
debian/control | 16 +-
debian/docs | 2 +-
debian/libncbi-vdb2.install | 1 +
debian/patches/find_hdf5_serial.patch | 2 +-
debian/patches/find_ngs-sdk.patch | 4 +-
debian/patches/series | 1 +
debian/patches/skip_failing_test.patch | 43 +-
debian/patches/spelling.patch | 2 +-
debian/patches/use_debian_packaged_libmbedx.patch | 71 +
debian/patches/use_debian_packaged_zlib.patch | 2 +-
debian/rules | 42 +-
debian/watch | 2 +-
interfaces/insdc/sra.vschema | 7 +-
interfaces/kdb/rowset-impl.h | 141 ++
interfaces/kdb/rowset.h | 186 +++
interfaces/kfc/defs.h | 14 +
interfaces/kfc/rc.h | 25 +-
interfaces/kfc/xc.h | 6 +
interfaces/kfg/kfg-priv.h | 14 +-
interfaces/kfg/properties.h | 6 +
interfaces/kfg/repository.h | 8 +-
interfaces/klib/debug.h | 2 +-
interfaces/klib/pack.h | 2 +-
interfaces/klib/rc.h | 28 +-
interfaces/klib/sra-release-version.h | 5 +-
interfaces/klib/status.h | 2 +-
interfaces/klib/text.h | 6 +
interfaces/kns/endpoint.h | 1 +
libs/kns/sysmgr.h => interfaces/kns/http-priv.h | 32 +-
interfaces/kns/http.h | 35 +-
interfaces/kns/kns-mgr-priv.h | 46 +
interfaces/kns/manager.h | 2 +-
interfaces/kns/socket.h | 25 +-
interfaces/kns/{manager.h => tls.h} | 69 +-
interfaces/kproc/timeout.h | 10 +-
interfaces/ktst/unit_test_suite.hpp | 6 +-
interfaces/ncbi/ncbi.vschema | 2 +-
interfaces/vdb/manager.h | 12 +-
interfaces/vdb/vdb.vschema | 2 +-
interfaces/vfs/manager-priv.h | 9 +
interfaces/vfs/resolver.h | 60 +-
libs/align/al_iterator.c | 8 +-
libs/align/align-access.c | 10 +-
libs/align/bam.c | 67 +-
libs/align/reader-refseq.c | 6 +-
libs/align/reader-wgs.c | 4 +-
libs/align/reference.c | 18 +-
libs/align/refseq-mgr.c | 4 +-
libs/align/writer-alignment.c | 22 +-
libs/align/writer-ref.c | 8 +-
libs/align/writer-reference.c | 18 +-
libs/align/writer-refseq.c | 2 +-
libs/align/writer-sequence.c | 12 +-
libs/ascp/unix/connect.c | 2 +-
libs/axf/align-local_ref_id.c | 2 +-
libs/axf/align-local_ref_start.c | 2 +-
libs/axf/align-ref-name.c | 2 +-
libs/axf/align-ref-pos.c | 4 +-
libs/axf/align-ref-seq-id.c | 2 +-
libs/axf/align-restore-read.c | 2 +-
libs/axf/cigar.c | 28 +-
libs/axf/get_mate_align_ids.c | 2 +-
libs/axf/make-cmp-read_desc.c | 2 +-
libs/axf/project_read_from_sequence.c | 4 +-
libs/axf/raw-restore-qual.c | 2 +-
libs/axf/raw-restore-read.c | 2 +-
libs/axf/ref-preserve_qual.c | 2 +-
libs/axf/ref-restore-read.c | 2 +-
libs/axf/ref-tbl-sub-select.c | 8 +-
libs/axf/refseq-stats.c | 2 +-
libs/axf/seq-construct-read.c | 4 +-
libs/axf/seq-restore-linkage-group.c | 4 +-
libs/axf/seq-restore-read.c | 14 +-
libs/blast/blast-mgr.c | 2 +-
libs/blast/reference.c | 40 +-
libs/blast/run-set.h | 3 +-
libs/hdf5/hdf5dir.c | 2 +-
libs/kapp/args-conv.c | 2 +-
libs/kapp/args.c | 14 +-
libs/kapp/loader-file.c | 12 +-
libs/kapp/log-xml.c | 2 +-
libs/kapp/queue-file.c | 4 +-
libs/kapp/tokenizer.c | 2 +-
libs/kdb/Makefile | 2 +
libs/kdb/column-cc.c | 2 +-
libs/kdb/kdb.c | 2 +-
libs/kdb/libkdb.vers.h | 2 +-
libs/kdb/meta.c | 12 +-
libs/kdb/ptrieval-v1.c | 2 +-
libs/kdb/ptrieval-v2.c | 2 +-
libs/kdb/rowset-it.c_old | 385 +++++
libs/kdb/rowset-priv.h_old | 116 ++
libs/kdb/rowset-simple.c | 434 ++++++
libs/kdb/rowset.c | 494 +++++++
libs/kdb/rowset.c_old | 1513 ++++++++++++++++++++
libs/kdb/table.c | 3 +
libs/kdb/trieidx-v1.c | 2 +-
libs/kdb/trieidx-v2.c | 4 +-
libs/kdb/wkdb.c | 2 +-
libs/kdb/wmeta.c | 26 +-
libs/kdb/wtable.c | 3 +
libs/kdb/wtrieidx-v1.c | 10 +-
libs/kdb/wtrieidx-v2.c | 8 +-
libs/kfc/refcount.c | 1 +
libs/kfc/tstate.c | 2 +-
libs/kfc/unix/sysrsrc.c | 2 +-
libs/kfc/vtbl.c | 9 +-
libs/kfg/Makefile | 24 +-
libs/kfg/certs.kfg | 31 +
libs/kfg/config-aws.c | 34 +-
libs/kfg/config.c | 289 ++--
libs/kfg/default.kfg | 10 +-
libs/kfg/properties.c | 47 +
libs/kfg/repository.c | 14 +-
libs/kfs/arc.c | 22 +-
libs/kfs/buffile-write.c | 6 +-
libs/kfs/buffile.c | 4 +-
libs/kfs/cacheteefile.c | 2 +-
libs/kfs/crc32.c | 8 +-
libs/kfs/extendable-ramfile.c | 4 +-
libs/kfs/ffext.c | 6 +-
libs/kfs/ffkey.c | 4 +-
libs/kfs/ffmagic.c | 12 +-
libs/kfs/fileformat.c | 6 +-
libs/kfs/md5.c | 18 +-
libs/kfs/pmem.c | 4 +-
libs/kfs/quickmount.c | 12 +-
libs/kfs/ramfile.c | 6 +-
libs/kfs/sra.c | 2 +-
libs/kfs/tar.c | 50 +-
libs/kfs/tocdir.c | 4 +-
libs/kfs/tocentry.c | 18 +-
libs/kfs/tocfile.c | 2 +-
libs/kfs/unix/sysdir.c | 12 +-
libs/klib/SHA-32bit.c | 10 +-
libs/klib/SHA-64bit.c | 10 +-
libs/klib/btree.c | 45 +-
libs/klib/data-buffer.c | 10 +-
libs/klib/judy/JudyHS.c | 4 +-
libs/klib/judy/JudyInsArray.c | 2 +-
libs/klib/maybeswap.h | 4 +-
libs/klib/md5.c | 6 +-
libs/klib/pack.c | 2 +-
libs/klib/printf.c | 16 +-
libs/klib/ptrie.c | 2 +-
libs/klib/rc-idx-tbl.c | 2 +
libs/klib/rc-tbl.c | 2 +
libs/klib/release-vers.h | 12 +-
libs/klib/report-klib.c | 10 +-
libs/klib/sra-release-version.c | 6 +
libs/klib/status-rc-strings.c | 1 +
libs/klib/status.c | 7 +-
libs/klib/text.c | 41 +-
libs/klib/trie.c | 2 +-
libs/klib/unpack.c | 6 +-
libs/klib/vector.c | 2 +-
libs/klib/vlen-encode.c | 2 +-
libs/klib/writer.c | 9 +-
libs/kns/Makefile | 3 +-
libs/kns/buffered-stream.c | 4 +-
libs/kns/endpoint.c | 2 +-
libs/kns/http-client.c | 664 +++++++--
libs/kns/http-file.c | 7 +-
libs/kns/http-priv.h | 40 +-
libs/kns/http.c | 47 +-
libs/kns/kns_manager-ext.c | 2 +-
libs/kns/linux/sysendpoint.c | 2 +-
libs/kns/manager.c | 631 ++++++--
libs/kns/mgr-priv.h | 15 +-
libs/kns/stream-priv.h | 12 +
libs/kns/sysmgr.h | 2 +-
interfaces/kproc/timeout.h => libs/kns/tls-priv.h | 52 +-
libs/kns/tls.c | 1087 ++++++++++++++
libs/kns/unix/syssock.c | 915 +++++++-----
libs/kns/url-fetcher-curl.c | 6 +-
libs/kproc/procmgr.c | 101 +-
libs/kproc/unix/systimeout.c | 42 +
libs/krypto/cipher-byte.c | 16 +-
libs/krypto/cipher-vec.c | 4 +-
libs/krypto/encfile.c | 6 +-
libs/krypto/encfilev2.c | 11 +-
libs/krypto/key.c | 2 +-
libs/krypto/reencfile.c | 6 +-
libs/krypto/unix/sysrng.c | 2 +-
libs/krypto/wgaencrypt.c | 8 +-
libs/kxml/xtoc.c | 8 +-
libs/loader/common-writer.c | 28 +-
libs/loader/reference-writer.c | 2 +-
libs/loader/sequence-writer.c | 18 +-
libs/ncbi-vdb/Makefile | 3 +
libs/ncbi-vdb/libncbi-vdb.vers | 2 +-
libs/ngs-jni/jni_String.c | 6 +-
libs/ngs/BAM_Alignment.c | 66 +-
libs/ngs/BAM_ReadCollection.c | 18 +-
libs/ngs/CSRA1_Alignment.c | 21 +
libs/ngs/CSRA1_Read.c | 123 +-
libs/ngs/CSRA1_Reference.c | 322 +++--
libs/ngs/CSRA1_ReferenceWindow.c | 253 ++--
libs/ngs/EBI_ReferenceSequence.c | 44 +-
libs/ngs/Makefile | 1 +
libs/ngs/NGS_Alignment.c | 29 +-
libs/ngs/NGS_Alignment.h | 5 +-
libs/ngs/NGS_Cursor.c | 38 +-
libs/ngs/NGS_Cursor.h | 44 +-
libs/ngs/NGS_FragmentBlob.c | 84 +-
libs/ngs/NGS_ReadCollection.c | 6 +-
libs/ngs/NGS_Statistics.c | 1 +
libs/ngs/NGS_String.c | 2 +-
libs/ngs/SRA_Read.c | 271 ++--
libs/ngs/SRA_Read.h | 60 +-
libs/ngs/SRA_ReferenceSequence.c | 46 +-
libs/ngs/SRA_Statistics.c | 51 +-
libs/ngs/VByteBlob.c | 117 ++
libs/{kns/sysmgr.h => ngs/VByteBlob.h} | 16 +-
libs/search/nucstrstr.c | 6 +-
libs/search/sw-search.c | 18 +-
libs/sra/reader-abi.c | 2 +-
libs/sra/reader-cmn.c | 4 +-
libs/sra/reader-fastq.c | 4 +-
libs/sra/reader-illumina.c | 2 +-
libs/sra/reader-sff.c | 16 +-
libs/sra/sracache.c | 10 +-
libs/sra/sramgr-cmn.c | 2 +-
libs/sraxf/extract-name_fmt.c | 2 +-
libs/sraxf/extract-spot_name.c | 2 +-
libs/sraxf/format-spot-name.c | 8 +-
libs/sraxf/fpcodec.c | 8 +-
libs/sraxf/index_lookup.c | 6 +-
libs/sraxf/qual4_decode.c | 4 +-
libs/sraxf/qual4_encode.c | 4 +-
libs/sraxf/read-seg-from-readn.c | 4 +-
libs/sraxf/stats.c | 8 +-
libs/sraxf/tokenize-spot_name-generic-fastq.c | 1 -
libs/sraxf/v0-decompress-init.c | 512 +++----
libs/sraxf/v0-decompress.c | 8 +-
libs/svdb/svdb.c | 6 +-
libs/tui/bsd/systui.c | 2 +-
libs/tui/linux/systui.c | 2 +-
libs/vdb/blob-headers.c | 4 +-
libs/vdb/blob.c | 16 +-
libs/vdb/cursor-cmn.c | 4 +-
libs/vdb/database-cmn.c | 4 +-
libs/vdb/database-depend.c | 2 +-
libs/vdb/dbmgr-cmn.c | 26 +
libs/vdb/environment-read.c | 6 +-
libs/vdb/gen-cast.pl | 2 +-
libs/vdb/index_insert.c | 4 +-
libs/vdb/index_lookup.c | 4 +-
libs/vdb/libvdb.vers.h | 2 +-
libs/vdb/merge.c | 4 +-
libs/vdb/meta-attr-write.c | 2 +-
libs/vdb/meta-write.c | 2 +-
libs/vdb/page-map.c | 30 +-
libs/vdb/parameter-read.c | 4 +-
libs/vdb/phys-cmn.c | 4 +-
libs/vdb/prod-cmn.c | 181 ++-
libs/vdb/prod-expr.c | 2 +-
libs/vdb/schema-dump.c | 4 +-
libs/vdb/schema-func.c | 3 +-
libs/vdb/schema-prod.c | 3 +-
libs/vdb/schema-tbl.c | 2 +-
libs/vdb/table-cmn.c | 2 +-
{test/vxf => libs/vdb/test}/Makefile | 41 +-
libs/vdb/test/test-prod-cmn.c | 10 +
libs/vdb/wcolumn.c | 6 +-
libs/vdb/wdatabase.c | 2 +-
libs/vdb/wphys.c | 4 +-
libs/vfs/manager.c | 225 ++-
libs/vfs/path-priv.h | 1 +
libs/vfs/path.c | 15 +-
libs/vfs/resolver-priv.h | 3 +
libs/vfs/resolver.c | 345 ++++-
libs/vxf/bit_or.c | 2 +-
libs/vxf/cut.c | 2 +-
libs/vxf/diff.c | 2 +-
libs/vxf/entrez.c | 2 +-
libs/vxf/extract_token.c | 2 +-
libs/vxf/fzip.c | 2 +-
libs/vxf/integral_0.c | 7 +-
libs/vxf/irzip.c | 4 +-
libs/vxf/iunzip.c | 24 +-
libs/vxf/izip.c | 28 +-
libs/vxf/rldecode.c | 2 +-
libs/vxf/rlencode.c | 8 +-
libs/vxf/simple-sub-select.c | 4 +-
libs/vxf/sprintf.c | 4 +-
libs/vxf/strtonum.c | 2 +-
libs/vxf/sum.c | 2 +-
libs/vxf/trim.c | 6 +-
libs/wgsxf/build_scaffold.c | 4 +-
libs/xfs/doc.c | 8 +-
libs/xfs/path.c | 18 +-
libs/xfs/unix/operations.c | 9 +-
libs/xfs/xencws.c | 2 +-
libs/xfs/xgap.c | 4 +-
libs/xfs/xgapk.c | 2 +-
libs/xfs/xhttp.c | 16 +-
libs/xfs/zehr.c | 2 +-
setup/konfigure.perl | 9 +-
test/{vxf => align}/Makefile | 40 +-
test/align/indextest.cpp | 113 ++
test/cc/asm-test.cpp | 15 +
test/cipher/test.sh | 5 +-
test/kapp/kapp-test.cpp | 4 +-
test/kdb/Makefile | 23 +-
test/kdb/kdbtest.cpp | 11 +-
test/kdb/remote_open_test.cpp | 4 +-
test/kdb/rowsettest.cpp | 819 +++++++++++
test/kfc/kfc.c | 0
test/kfg/flat-sra-kfg.cpp | 58 +-
test/kfg/kfgtest.cpp | 4 +-
test/kfs/Makefile | 2 +-
test/kfs/cacheteetest.cpp | 13 +-
test/klib/test-klib.cpp | 6 +-
test/kns/Makefile | 50 +
test/kns/TestProxy.hpp | 227 +++
test/kns/http-client.c | 17 +
test/kns/http_dropconnection_test.cpp | 4 +-
test/kns/httptest.cpp | 13 +-
test/kns/knstest.cpp | 47 +-
test/kns/test-proxy-with-env.cpp | 112 ++
test/kns/test-proxy.cpp | 263 ++++
test/kns/test-proxy.h | 7 +
test/kns/test-proxy/2-path-no-env/config | 1 +
test/kns/test-proxy/2-path-no-env/expected | 2 +
test/kns/test-proxy/2-path-no-port-no-env/config | 1 +
test/kns/test-proxy/2-path-no-port-no-env/expected | 2 +
.../MULTIPLE_PROXIES/all.MULTIPLE_PROXIES/config | 1 +
.../all.MULTIPLE_PROXIES/environment | 4 +
.../MULTIPLE_PROXIES/all.MULTIPLE_PROXIES/expected | 10 +
.../disabled.MULTIPLE_PROXIES/config | 2 +
.../disabled.MULTIPLE_PROXIES/environment | 4 +
.../disabled.MULTIPLE_PROXIES/expected | 0
.../enabled.MULTIPLE_PROXIES/config | 2 +
.../enabled.MULTIPLE_PROXIES/environment | 4 +
.../enabled.MULTIPLE_PROXIES/expected | 10 +
.../env-kfg.MULTIPLE_PROXIES/config | 2 +
.../env-kfg.MULTIPLE_PROXIES/environment | 4 +
.../env-kfg.MULTIPLE_PROXIES/expected | 10 +
.../env-only.MULTIPLE_PROXIES/config | 2 +
.../env-only.MULTIPLE_PROXIES/environment | 4 +
.../env-only.MULTIPLE_PROXIES/expected | 8 +
.../ignore.MULTIPLE_PROXIES/config | 2 +
.../ignore.MULTIPLE_PROXIES/environment | 4 +
.../ignore.MULTIPLE_PROXIES/expected | 0
.../kfg-env.MULTIPLE_PROXIES/config | 2 +
.../kfg-env.MULTIPLE_PROXIES/environment | 4 +
.../kfg-env.MULTIPLE_PROXIES/expected | 10 +
.../proxy-not-only.MULTIPLE_PROXIES/config | 2 +
.../proxy-not-only.MULTIPLE_PROXIES/environment | 4 +
.../proxy-not-only.MULTIPLE_PROXIES/expected | 10 +
.../proxy-only.MILTIPLE_PROXIES/config | 2 +
.../proxy-only.MILTIPLE_PROXIES/environment | 4 +
.../proxy-only.MILTIPLE_PROXIES/expected | 10 +
test/kns/test-proxy/all/config | 1 +
test/kns/test-proxy/all/environment | 4 +
test/kns/test-proxy/all/expected | 5 +
test/kns/test-proxy/comma-error/environment | 1 +
test/kns/test-proxy/comma-error/expected | 0
test/kns/test-proxy/disabled/config | 2 +
test/kns/test-proxy/disabled/environment | 4 +
test/kns/test-proxy/disabled/expected | 0
test/kns/test-proxy/enabled/config | 2 +
test/kns/test-proxy/enabled/environment | 4 +
test/kns/test-proxy/enabled/expected | 5 +
test/kns/test-proxy/env-kfg/config | 2 +
test/kns/test-proxy/env-kfg/environment | 4 +
test/kns/test-proxy/env-kfg/expected | 5 +
test/kns/test-proxy/env-only/config | 2 +
test/kns/test-proxy/env-only/environment | 4 +
test/kns/test-proxy/env-only/expected | 4 +
test/kns/test-proxy/error/config | 1 +
test/kns/test-proxy/error/environment | 1 +
test/kns/test-proxy/error/expected | 0
test/kns/test-proxy/http_proxy/environment | 1 +
test/kns/test-proxy/http_proxy/expected | 1 +
test/kns/test-proxy/ignore/config | 2 +
test/kns/test-proxy/ignore/environment | 4 +
test/kns/test-proxy/ignore/expected | 0
test/kns/test-proxy/kfg-env/config | 2 +
test/kns/test-proxy/kfg-env/environment | 4 +
test/kns/test-proxy/kfg-env/expected | 5 +
test/kns/test-proxy/kfg-only/config | 2 +
test/kns/test-proxy/kfg-only/environment | 4 +
test/kns/test-proxy/kfg-only/expected | 1 +
test/kns/test-proxy/no-env/config | 1 +
test/kns/test-proxy/no-env/expected | 1 +
test/kns/test-proxy/no-port-no-env/config | 1 +
test/kns/test-proxy/no-port-no-env/expected | 1 +
test/kns/test-proxy/proxy-not-only/config | 2 +
test/kns/test-proxy/proxy-not-only/environment | 4 +
test/kns/test-proxy/proxy-not-only/expected | 5 +
test/kns/test-proxy/proxy-only/config | 2 +
test/kns/test-proxy/proxy-only/environment | 4 +
test/kns/test-proxy/proxy-only/expected | 5 +
test/kproc/kproctest.cpp | 111 ++
test/krypto/test-aes-ciphers.c | 2 +-
test/krypto/test-cmn.cpp | 4 +-
test/krypto/test-modes.c | 2 +-
test/loader/sequence-writer.c | 18 +-
test/ngs-c++/CSRA1test.cpp | 281 ++--
test/ngs-c++/Makefile | 28 +-
test/ngs-c++/SRAtest.cpp | 120 +-
test/ngs-java/ngs_test_CSRA1.java | 103 ++
test/ngs/ngstest.cpp | 125 +-
test/ngs/ngstest_csra1.cpp | 121 +-
test/ngs/ngstest_csra1_refwin.cpp | 429 +++---
test/ngs/ngstest_reference.cpp | 31 +-
test/ngs/ngstest_sra.cpp | 36 +-
test/only-remote-repository.kfg | 2 +-
test/search/agrep-main.c | 2 +-
test/search/search-vdb.cpp | 2 +-
test/vdb/.gitignore | 1 +
test/vdb/Makefile | 25 +-
test/vdb/kfg/empty/empty.kfg | 4 +-
test/vdb/test-VDB-3060.cpp | 33 +-
test/vdb/test-VDB-3061.cpp | 250 ++++
test/vdb/test-wvdb.cpp | 205 ++-
test/vfs/Makefile | 11 +
.../redirect-rejected-names-cgi-http-to-https.cpp | 213 +++
.../incomplete.kfg | 1 +
test/vxf/Makefile | 25 +-
test/vxf/VDB-2915.cpp | 508 +++++++
test/vxf/local_config/local.kfg | 2 +
vdb3/src/kfc/memory.cpp | 2 +-
436 files changed, 13734 insertions(+), 3657 deletions(-)
diff --cc debian/changelog
index d00ae22,3d27df5..efe68b6
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,11 -1,38 +1,46 @@@
+ ncbi-vdb (2.8.1+dfsg-2) unstable; urgency=medium
+
+ * Fix install dir by using DEB_HOST_MULTIARCH instead of DEB_BUILD_GNU_TYPE
+ (thanks for the patch to Graham Inggs <ginggs at debian.org>)
+ Closes: #859260
+
+ -- Andreas Tille <tille at debian.org> Sat, 01 Apr 2017 22:50:01 +0200
+
+ ncbi-vdb (2.8.1+dfsg-1) unstable; urgency=medium
+
+ * New upstream version
+ * Install libs/kfg/*.kfg into /usr/lib/ncbi-vdb/kfg/
+
+ -- Andreas Tille <tille at debian.org> Wed, 11 Jan 2017 15:27:16 +0100
+
+ ncbi-vdb (2.8.0+dfsg-2) unstable; urgency=medium
+
+ * Make sure libraries are properly linked with libmbed
+ Closes: #844900
+ * Adjust dependencies from other development packages
+ * debhelper 10
+ * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org> Fri, 25 Nov 2016 12:41:49 +0100
+
+ ncbi-vdb (2.8.0+dfsg-1) unstable; urgency=medium
+
+ * New upstream version
+ * Use wildcard instead of $(CPU) in install to fix FTBFS on i386 (thanks
+ for the patch to Logan Rosen <logan at ubuntu.com>)
+ Closes: #843129
+ * New Build-Depends: libmbedtls-dev
+
+ -- Andreas Tille <tille at debian.org> Fri, 04 Nov 2016 10:15:13 +0100
+
+ncbi-vdb (2.7.0+dfsg-4~bpo8+1) jessie-backports; urgency=medium
+
+ * Rebuild for jessie-backports.
+ * s/default-jdk-headless/openjdk-8-jdk-headless/ since there is no
+ default-jdk-headless in Jessie
+
+ -- Andreas Tille <tille at debian.org> Fri, 09 Sep 2016 08:49:08 +0200
+
ncbi-vdb (2.7.0+dfsg-4) unstable; urgency=medium
* Fix schema paths
diff --cc debian/control
index 29f04fd,4a9061a..9c87bbb
--- a/debian/control
+++ b/debian/control
@@@ -11,8 -11,9 +11,9 @@@ Build-Depends: debhelper (>= 10)
libmagic-dev,
libngs-sdk-dev (>= 1.2.4),
libngs-java,
+ libmbedtls-dev,
zlib1g-dev,
- default-jdk-headless
+ openjdk-8-jdk-headless
Standards-Version: 3.9.8
Vcs-Browser: https://anonscm.debian.org/cgit/debian-med/ncbi-vdb.git
Vcs-Git: https://anonscm.debian.org/git/debian-med/ncbi-vdb.git
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/ncbi-vdb.git
More information about the debian-med-commit
mailing list