[med-svn] r23811 - in trunk/packages/R/r-cran-treescape/branches/jessie-backports: . 1.10.18-6~bpo8+1

Andreas Tille tille at moszumanska.debian.org
Fri Jun 9 13:30:43 UTC 2017 

Author: tille
Date: 2017-06-09 13:30:43 +0000 (Fri, 09 Jun 2017)
New Revision: 23811

Added:
   trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/
Modified:
   trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/changelog
   trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/compat
   trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/control
   trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/copyright
   trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/rules
   trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/watch
Log:
Tagged 1.10.18-6~bpo8+1


Modified: trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/changelog
===================================================================
--- trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.9.17-1~bpo8+1/changelog	2017-06-07 10:58:40 UTC (rev 23790)
+++ trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/changelog	2017-06-09 13:30:43 UTC (rev 23811)
@@ -1,3 +1,69 @@
+r-cran-treescape (1.10.18-6~bpo8+1) jessie-backports; urgency=medium
+
+  * Rebuild for jessie-backports.
+
+ -- Andreas Tille <tille at debian.org>  Fri, 09 Jun 2017 15:12:58 +0200
+
+r-cran-treescape (1.10.18-6) unstable; urgency=medium
+
+  * The segfault seems to be a random effect since formerly successful
+    build architecture mips64el needs to be excluded now as well
+
+ -- Andreas Tille <tille at debian.org>  Thu, 22 Dec 2016 11:18:49 +0100
+
+r-cran-treescape (1.10.18-5) unstable; urgency=medium
+
+  * Set quote correctly
+
+ -- Andreas Tille <tille at debian.org>  Thu, 22 Dec 2016 09:26:46 +0100
+
+r-cran-treescape (1.10.18-4) unstable; urgency=medium
+
+  * Fix missing quote sign
+
+ -- Andreas Tille <tille at debian.org>  Thu, 22 Dec 2016 08:14:11 +0100
+
+r-cran-treescape (1.10.18-3) unstable; urgency=medium
+
+  * Set stack limit drastically higher for those architectures that are
+    somehow needing this (see bug #845753).  This is only done for upstream
+    version 1.10.18 for the moment.
+
+ -- Andreas Tille <tille at debian.org>  Mon, 19 Dec 2016 21:49:08 +0100
+
+r-cran-treescape (1.10.18-2) unstable; urgency=medium
+
+  * Make sure xvfb-run is used in d/rules
+  * Add libgl1-mesa-dri to Build-Depends
+  * Rebuild with new toolchain possibly
+    Closes: #845753
+
+ -- Andreas Tille <tille at debian.org>  Wed, 14 Dec 2016 06:45:37 +0100
+
+r-cran-treescape (1.10.18-1) unstable; urgency=medium
+
+  * New upstream version
+    Closes: #845753
+
+ -- Andreas Tille <tille at debian.org>  Mon, 12 Dec 2016 08:50:33 +0100
+
+r-cran-treescape (1.10.17-2) unstable; urgency=medium
+
+  * Fix issue with new release of ape
+    Closes: #845753
+  * debhelper 10
+  * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org>  Thu, 08 Dec 2016 16:01:06 +0100
+
+r-cran-treescape (1.10.17-1) unstable; urgency=medium
+
+  * New upstream version
+  * Convert to dh-r
+  * Canonical homepage for CRAN
+
+ -- Andreas Tille <tille at debian.org>  Fri, 28 Oct 2016 12:02:47 +0200
+
 r-cran-treescape (1.9.17-1~bpo8+1) jessie-backports; urgency=medium
 
   * Rebuild for jessie-backports.

Modified: trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/compat
===================================================================
--- trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.9.17-1~bpo8+1/compat	2017-06-07 10:58:40 UTC (rev 23790)
+++ trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/compat	2017-06-09 13:30:43 UTC (rev 23811)
@@ -1 +1 @@
-9
+10

Modified: trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/control
===================================================================
--- trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.9.17-1~bpo8+1/control	2017-06-07 10:58:40 UTC (rev 23790)
+++ trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/control	2017-06-09 13:30:43 UTC (rev 23811)
@@ -3,8 +3,8 @@
 Uploaders: Andreas Tille <tille at debian.org>
 Section: gnu-r
 Priority: optional
-Build-Depends: debhelper (>= 9),
-               cdbs,
+Build-Depends: debhelper (>= 10),
+               dh-r,
                r-base-dev,
                r-cran-ape,
                r-cran-ade4,
@@ -21,31 +21,20 @@
                r-cran-htmlwidgets,
                r-cran-scatterd3,
                xauth,
-               xvfb
+               xvfb,
+               libgl1-mesa-dri
 Standards-Version: 3.9.8
 Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-cran-treescape/trunk/
 Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-cran-treescape/trunk/
-Homepage: https://cran.r-project.org/web/packages/treescape/
+Homepage: https://cran.r-project.org/package=treescape
 
 Package: r-cran-treescape
 Architecture: any
 Depends: ${misc:Depends},
          ${shlibs:Depends},
-         ${R:Depends},
-         r-cran-ape,
-         r-cran-ade4,
-         r-cran-adephylo,
-         r-cran-adegraphics,
-         r-cran-combinat,
-         r-cran-distory,
-         r-cran-phangorn (>= 2.0.3),
-         r-cran-rcpp,
-         r-cran-rglwidget,
-         r-cran-rlumshiny,
-         r-cran-shinybs,
-         r-cran-fields,
-         r-cran-htmlwidgets,
-         r-cran-scatterd3
+         ${R:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
 Description: GNU R Statistical Exploration of Landscapes of Phylogenetic Trees
  This GNU R package provides tools for the exploration of distributions
  of phylogenetic trees. This package includes a shiny interface which can

Modified: trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/copyright
===================================================================
--- trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.9.17-1~bpo8+1/copyright	2017-06-07 10:58:40 UTC (rev 23790)
+++ trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/copyright	2017-06-09 13:30:43 UTC (rev 23811)
@@ -1,9 +1,9 @@
 Format: http://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Contact: Michelle Kendall <m.kendall at imperial.ac.uk>
-Source: https://cran.r-project.org/web/packages/treescape/
+Source: https://cran.r-project.org/package=treescape
 
 Files: *
-Copyright: 2009-2015 Thibaut Jombart, Michelle Kendall, Jacob Almagro-Garcia, Caroline Colijn
+Copyright: 2009-2016 Thibaut Jombart, Michelle Kendall, Jacob Almagro-Garcia, Caroline Colijn
 License: GPL-2+
 
 Files: inst/shiny/www/bootstrap.simplex.css

Modified: trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/rules
===================================================================
--- trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.9.17-1~bpo8+1/rules	2017-06-07 10:58:40 UTC (rev 23790)
+++ trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/rules	2017-06-09 13:30:43 UTC (rev 23811)
@@ -1,3 +1,28 @@
 #!/usr/bin/make -f
 
-include /usr/share/R/debian/r-cran.mk
+DEBVERS   := $(shell dpkg-parsechangelog | awk '/^Version:/ {print $$2}')
+VERSION   := $(shell echo '$(DEBVERS)' | sed -e 's/^[0-9]*://' -e 's/-.*//')
+BUILDARCH := $(shell dpkg-architecture -qDEB_BUILD_ARCH)
+
+HUGESTACK := false
+
+ifeq ($(VERSION),1.10.18)
+ifeq ($(BUILDARCH),$(filter $(BUILDARCH), armhf i386 mipsel mips64el))
+	HUGESTACK := true
+endif
+endif
+
+%:
+	dh $@ --buildsystem R
+
+override_dh_auto_install:
+ifeq ($(HUGESTACK),true)
+	echo "****************** Version = 1.10.18, Architecture armhf or i386 or mipsel ***********************************"
+	echo "****************** Set stack usage to be drastically higher on 32bit LE platforms (see bug #845753 ***********"
+	/bin/sh -c "ulimit -S -s 200000 ; exec \
+	    xvfb-run --auto-servernum --server-num=20 -s '-screen 0 1024x768x24 -ac +extension GLX +render -noreset' \
+	    dh_auto_install"
+else
+	xvfb-run --auto-servernum --server-num=20 -s "-screen 0 1024x768x24 -ac +extension GLX +render -noreset" \
+	    dh_auto_install
+endif

Modified: trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/watch
===================================================================
--- trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.9.17-1~bpo8+1/watch	2017-06-07 10:58:40 UTC (rev 23790)
+++ trunk/packages/R/r-cran-treescape/branches/jessie-backports/1.10.18-6~bpo8+1/watch	2017-06-09 13:30:43 UTC (rev 23811)
@@ -1,3 +1,3 @@
-version=3
+version=4
 http://cran.r-project.org/src/contrib/treescape_([-0-9\.]*).tar.gz

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