[med-svn] [fastqc] branch debian/jessie-backports updated (01cde9f -> efd4531)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch debian/jessie-backports
in repository fastqc.

      from  01cde9f   Rebuild for jessie-backports
      adds  abc3d37   Reintroduced /etc/fastqc/Configuration
      adds  932b5f6   Added ref to SEQwiki
      adds  870b1fa   Corrected for incomplete URL in registry entry
      adds  5389afd   Autopkgtest added
      adds  2d95f08   cme fix dpkg-control, upload to unstable
      adds  04f3e4c   Fix autopkgtest: add depend to unzip
      adds  22130ad   Install upstream changelog using dh_installchangelogs
      adds  2695f4f   Upload to unstable
      adds  3b58a9a   temporarily drop support for fast5 file format
      adds  06c960d   debhelper 10
      adds  aa9c9df   d/watch: version=4
      adds  8a90a6c   Fix line endings in patch
      adds  dc4eda1   Upload to unstable
      adds  19b42d0   use new htsjdk API
      adds  64633b7   add bug number
      adds  59233c0   fix API change
      adds  ce4840c   add some BAM/SAM test data
      adds  26b9998   make sure jar dependencies are found
      adds  214bbe8   explicitly add dependencies
      adds  117d555   register included binary example
      adds  166eb42   update d/changelog
       new  5b4efb1   Merge branch 'master' into debian/jessie-backports
       new  efd4531   Rebuild for jessie-backports

The 2 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


Summary of changes:
 debian/changelog                  |  60 +++++
 debian/compat                     |   2 +-
 debian/control                    |  10 +-
 debian/docs                       |   1 -
 debian/fastqc.examples            |   1 +
 debian/install                    |   3 +-
 debian/patches/drop-fast5.patch   | 160 ++++++++++++
 debian/patches/fastqc.patch       |  11 +-
 debian/patches/htsjdk-api.patch   |  49 ++++
 debian/patches/series             |   2 +
 debian/rules                      |   3 +
 debian/source/include-binaries    |   1 +
 debian/tests.fastqc/example.fastq | 501 ++++++++++++++++++++++++++++++++++++++
 debian/tests.fastqc/toy.bam       | Bin 0 -> 478 bytes
 debian/tests.fastqc/toy.sam       |  14 ++
 debian/tests/control              |   3 +
 debian/tests/run-unit-test        |  31 +++
 debian/upstream/metadata          |   3 +
 debian/watch                      |   2 +-
 19 files changed, 843 insertions(+), 14 deletions(-)
 create mode 100644 debian/fastqc.examples
 create mode 100644 debian/patches/drop-fast5.patch
 create mode 100644 debian/patches/htsjdk-api.patch
 create mode 100644 debian/source/include-binaries
 create mode 100644 debian/tests.fastqc/example.fastq
 create mode 100644 debian/tests.fastqc/toy.bam
 create mode 100644 debian/tests.fastqc/toy.sam
 create mode 100644 debian/tests/control
 create mode 100644 debian/tests/run-unit-test

-- 
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