[med-svn] [ncbi-entrez-direct] 04/05: Install the new asp-ls and gbf2xml scripts.

[Aaron M. Ucko]

This is an automated email from the git hooks/post-receive script.

ucko pushed a commit to branch experimental
in repository ncbi-entrez-direct.

commit 36da36e3216eb1c344a4c3ba3d6bea22d55ef395
Author: Aaron M. Ucko <ucko at debian.org>
Date:   Fri Jun 9 17:59:45 2017 -0400

    Install the new asp-ls and gbf2xml scripts.
    
    Install asp-ls as an example (alongside asp-cp) and gbf2xml as an
    executable; give gbf2xml a man page.
---
 debian/changelog     |  4 +++-
 debian/examples      |  2 ++
 debian/man/gbf2xml.1 | 21 +++++++++++++++++++++
 debian/rules         |  2 +-
 4 files changed, 27 insertions(+), 2 deletions(-)

diff --git a/debian/changelog b/debian/changelog
index 717af85..3441f2c 100644
--- a/debian/changelog
+++ b/debian/changelog
@@ -2,8 +2,10 @@ ncbi-entrez-direct (6.80.20170608+ds-1) UNRELEASED; urgency=medium
 
   * New upstream release.  (NOT RELEASED YET.)
   * debian/man/ftp-cp.1: Update accordingly.
+  * Install the new asp-ls script as an example (alongside asp-cp) and
+    the new gbf2xml script as an executable; give gbf2xml a man page.
 
- -- Aaron M. Ucko <ucko at debian.org>  Fri, 09 Jun 2017 17:58:00 -0400
+ -- Aaron M. Ucko <ucko at debian.org>  Fri, 09 Jun 2017 17:59:43 -0400
 
 ncbi-entrez-direct (6.70.20170508+ds-1) experimental; urgency=medium
 
diff --git a/debian/examples b/debian/examples
index 5b95074..2913960 100644
--- a/debian/examples
+++ b/debian/examples
@@ -1 +1,3 @@
 asp-cp
+asp-ls
+
diff --git a/debian/man/gbf2xml.1 b/debian/man/gbf2xml.1
new file mode 100644
index 0000000..c1b1aa2
--- /dev/null
+++ b/debian/man/gbf2xml.1
@@ -0,0 +1,21 @@
+.TH GBF2XML 1 2017-06-09 NCBI "NCBI Entrez Direct User's Manual"
+.SH NAME
+gbf2xml \- Convert GenBank flatfiles to INSDSeq XML
+.SH SYNOPSIS
+.B gbf2xml
+\[\|.I filename\|\]
+.SH DESCRIPTION
+\fBgbf2xml\fP reads the specified GenBank flatfile
+(or from standard input when not passed a filename)
+and writes a corresponding INSDSeq XML document
+to standard output.
+.SH BUGS
+Feature intervals that refer to 'far' locations, i.e., those not within
+the cited record and which have an accession and colon, are suppressed.
+Those rare features (e.g., trans\-splicing between molecules) are lost.
+
+Keywords and References are currently not supported.
+.SH SEE ALSO
+.BR asn2ff (1),
+.BR asn2gb (1),
+.BR xtract (1).
diff --git a/debian/rules b/debian/rules
index d8fbd18..7d478f3 100755
--- a/debian/rules
+++ b/debian/rules
@@ -13,7 +13,7 @@ MODES = address citmatch contact filter link notify post proxy search spell
 STD_WRAPPERS = $(MODES:%=bin/e%)
 WRAPPERS = $(STD_WRAPPERS) bin/esummary
 AS_IS_SCRIPTS = amino-acid-composition between-two-genes edirutil \
-	        entrez-phrase-search filter-stop-words ftp-* \
+	        entrez-phrase-search filter-stop-words ftp-* gbf2xml \
 	        join-into-groups-of nquire reorder-columns sort-uniq-count* \
 	        word-at-a-time xy-plot
 

-- 
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