[med-svn] [r-cran-phangorn] 01/02: Merge tag 'debian/2.1.1-1' into debian/jessie-backports
Andreas Tille
tille at debian.org
Sat Jun 10 05:30:18 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a commit to branch debian/jessie-backports
in repository r-cran-phangorn.
commit d546c685f7917cd12b4162013f85b779ba6c2d27
Merge: f12497c ee011e6
Author: Andreas Tille <tille at debian.org>
Date: Sat Jun 10 07:14:30 2017 +0200
Merge tag 'debian/2.1.1-1' into debian/jessie-backports
DESCRIPTION | 22 +-
MD5 | 124 ++--
NAMESPACE | 26 +-
NEWS | 36 +
R/Densi.R | 231 ------
R/RcppExports.R | 11 +
R/ancestral_pml.R | 32 +-
R/bootstrap.R | 55 +-
R/distSeq.R | 97 +--
R/distTree.R | 104 ++-
R/fitch.R | 3 +-
R/networx.R | 120 +++-
R/parsimony.R | 46 +-
R/phyDat.R | 388 ++++++-----
R/phylo.R | 36 +-
R/sankoff.R | 2 -
R/simSeq.R | 17 +-
R/superTree.R | 135 ++++
R/treeManipulation.R | 65 +-
R/treedist.R | 154 +++-
R/zzz.R | 5 +
README.md | 6 +-
build/vignette.rds | Bin 375 -> 376 bytes
debian/changelog | 11 +
debian/compat | 2 +-
debian/control | 16 +-
debian/copyright | 14 +-
debian/docs | 1 -
debian/rules | 7 +-
debian/watch | 2 +-
inst/doc/Ancestral.pdf | Bin 260891 -> 245485 bytes
inst/doc/IntertwiningTreesAndNetworks.html | 6 +-
inst/doc/Networx.Rmd | 2 +-
inst/doc/Networx.html | 16 +-
inst/doc/Trees.pdf | Bin 167890 -> 167906 bytes
inst/doc/phangorn-specials.pdf | Bin 180115 -> 179955 bytes
man/SOWH.test.Rd | 2 +-
man/ancestral.pml.Rd | 2 +-
man/as.splits.Rd | 9 +-
man/densiTree.Rd | 7 +-
man/dist.p.Rd | 2 +-
man/hadamard.Rd | 14 +-
man/maxCladeCred.Rd | 2 +-
man/midpoint.Rd | 2 +-
man/modelTest.Rd | 4 +-
man/nni.Rd | 2 +-
man/parsimony.Rd | 5 +-
man/phyDat.Rd | 19 +-
man/plot.networx.Rd | 2 +-
man/pml.Rd | 4 +-
man/pml.fit.Rd | 31 +-
man/simSeq.Rd | 5 +-
man/superTree.Rd | 22 +-
man/treedist.Rd | 20 +-
src/RcppExports.cpp | 30 +
src/dist.c | 9 +-
src/fitch.c | 18 +-
src/ml.c | 51 +-
src/phangorn.c | 25 +-
src/phangorn_help.cpp | 48 ++
src/sankoff.c | 11 +-
src/sprdist.c | 1047 ++++++++++++++++++++++++++++
tests/testthat/test_dist_tree.R | 22 +
tests/testthat/test_distances.R | 22 +-
tests/testthat/test_hadamard.R | 21 +
tests/testthat/test_parsimony.R | 34 +-
tests/testthat/test_phyDat.R | 78 ++-
tests/testthat/test_pml.R | 93 ++-
tests/testthat/test_splits.R | 39 ++
tests/testthat/test_superTree.R | 26 +
tests/testthat/test_treeManipulation.R | 31 +-
tests/testthat/test_treedist.R | 27 +
vignettes/Networx.Rmd | 2 +-
vignettes/phangorn.bib | 79 +++
74 files changed, 2715 insertions(+), 944 deletions(-)
diff --cc debian/changelog
index 053dbf8,fd0904b..fdba2e0
--- a/debian/changelog
+++ b/debian/changelog
@@@ -1,9 -1,14 +1,20 @@@
+ r-cran-phangorn (2.1.1-1) unstable; urgency=medium
+
+ * New upstream version
+ * Convert to dh-r
+ * debhelper 10
+ * Canonical homepage for CRAN
+ * Update copyright
+ * d/watch: version=4
+
+ -- Andreas Tille <tille at debian.org> Wed, 07 Dec 2016 09:32:58 +0100
+
+r-cran-phangorn (2.0.4-1~bpo8+1) jessie-backports; urgency=medium
+
+ * Rebuild for jessie-backports.
+
+ -- Andreas Tille <tille at debian.org> Thu, 14 Jul 2016 11:45:31 +0200
+
r-cran-phangorn (2.0.4-1) unstable; urgency=medium
* Fix title syntax in upstream/metadata
--
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