[med-svn] r23825 - in trunk/packages/R/r-bioc-delayedarray/tags: . 0.2.7-1 0.2.7-1/tests
Graham Inggs
ginggs at moszumanska.debian.org
Tue Jun 13 10:40:37 UTC 2017
Author: ginggs
Date: 2017-06-13 10:40:37 +0000 (Tue, 13 Jun 2017)
New Revision: 23825
Added:
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/changelog
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/control
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/copyright
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/tests/control
Removed:
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/changelog
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/control
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/copyright
trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/tests/control
Log:
Tagged 0.2.7-1
Deleted: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/changelog
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/trunk/debian/changelog 2017-06-10 05:29:42 UTC (rev 23821)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/changelog 2017-06-13 10:40:37 UTC (rev 23825)
@@ -1,5 +0,0 @@
-r-bioc-delayedarray (0.2.4-1) unstable; urgency=medium
-
- * Initial release (Closes: #863415)
-
- -- Graham Inggs <ginggs at debian.org> Fri, 26 May 2017 17:15:55 +0200
Copied: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/changelog (from rev 23824, trunk/packages/R/r-bioc-delayedarray/trunk/debian/changelog)
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/changelog (rev 0)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/changelog 2017-06-13 10:40:37 UTC (rev 23825)
@@ -0,0 +1,14 @@
+r-bioc-delayedarray (0.2.7-1) unstable; urgency=medium
+
+ * New upstream version
+ * Update Build-Depends: r-bioc-s4vectors (>= 0.14.3)
+ * Add missing dependency for autopkgtest: r-cran-runit
+ * Add copyright year to debian/copyright
+
+ -- Graham Inggs <ginggs at debian.org> Tue, 13 Jun 2017 11:34:56 +0200
+
+r-bioc-delayedarray (0.2.4-1) unstable; urgency=medium
+
+ * Initial release (Closes: #863415)
+
+ -- Graham Inggs <ginggs at debian.org> Fri, 26 May 2017 17:15:55 +0200
Deleted: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/control
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/trunk/debian/control 2017-06-10 05:29:42 UTC (rev 23821)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/control 2017-06-13 10:40:37 UTC (rev 23825)
@@ -1,31 +0,0 @@
-Source: r-bioc-delayedarray
-Section: gnu-r
-Priority: optional
-Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
-Uploaders: Graham Inggs <ginggs at debian.org>
-Build-Depends: debhelper (>= 10),
- dh-r,
- r-base-dev,
- r-bioc-biocgenerics,
- r-bioc-iranges,
- r-bioc-s4vectors,
- r-cran-matrixstats
-Standards-Version: 3.9.8
-Homepage: https://bioconductor.org/packages/DelayedArray/
-Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-delayedarray/trunk/
-Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-delayedarray/trunk/
-
-Package: r-bioc-delayedarray
-Architecture: all
-Depends: ${R:Depends}, ${misc:Depends}, ${shlibs:Depends}
-Recommends: ${R:Recommends}
-Suggests: ${R:Suggests}
-Description: BioConductor delayed operations on array-like objects
- Wrapping an array-like object (typically an on-disk object) in
- a DelayedArray object allows one to perform common array operations
- on it without loading the object in memory. In order to reduce memory
- usage and optimize performance, operations on the object are either
- delayed or executed using a block processing mechanism. Note that this
- also works on in-memory array-like objects like DataFrame objects
- (typically with Rle columns), Matrix objects, and ordinary arrays and
- data frames.
Copied: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/control (from rev 23824, trunk/packages/R/r-bioc-delayedarray/trunk/debian/control)
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/control (rev 0)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/control 2017-06-13 10:40:37 UTC (rev 23825)
@@ -0,0 +1,31 @@
+Source: r-bioc-delayedarray
+Section: gnu-r
+Priority: optional
+Maintainer: Debian Med Packaging Team <debian-med-packaging at lists.alioth.debian.org>
+Uploaders: Graham Inggs <ginggs at debian.org>
+Build-Depends: debhelper (>= 10),
+ dh-r,
+ r-base-dev,
+ r-bioc-biocgenerics,
+ r-bioc-iranges,
+ r-bioc-s4vectors (>= 0.14.3),
+ r-cran-matrixstats
+Standards-Version: 3.9.8
+Homepage: https://bioconductor.org/packages/DelayedArray/
+Vcs-Browser: https://anonscm.debian.org/viewvc/debian-med/trunk/packages/R/r-bioc-delayedarray/trunk/
+Vcs-Svn: svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-delayedarray/trunk/
+
+Package: r-bioc-delayedarray
+Architecture: all
+Depends: ${R:Depends}, ${misc:Depends}, ${shlibs:Depends}
+Recommends: ${R:Recommends}
+Suggests: ${R:Suggests}
+Description: BioConductor delayed operations on array-like objects
+ Wrapping an array-like object (typically an on-disk object) in
+ a DelayedArray object allows one to perform common array operations
+ on it without loading the object in memory. In order to reduce memory
+ usage and optimize performance, operations on the object are either
+ delayed or executed using a block processing mechanism. Note that this
+ also works on in-memory array-like objects like DataFrame objects
+ (typically with Rle columns), Matrix objects, and ordinary arrays and
+ data frames.
Deleted: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/copyright
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/trunk/debian/copyright 2017-06-10 05:29:42 UTC (rev 23821)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/copyright 2017-06-13 10:40:37 UTC (rev 23825)
@@ -1,106 +0,0 @@
-Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
-Upstream-Name: DelayedArray
-Upstream-Contact: Hervé Pagès <hpages at fredhutch.org>
-Source: https://bioconductor.org/packages/DelayedArray/
-
-Files: *
-Copyright: Hervé Pagès <hpages at fredhutch.org>
-License: Artistic-2.0
-
-Files: debian/*
-Copyright: 2017 Graham Inggs <ginggs at debian.org>
-License: Artistic-2.0
-
-License: Artistic-2.0
- The "Artistic License"
- .
- Preamble
- .
- 1. You may make and give away verbatim copies of the source form of the
- Standard Version of this Package without restriction, provided that
- you duplicate all of the original copyright notices and associated
- disclaimers.
- .
- 2. You may apply bug fixes, portability fixes and other modifications
- derived from the Public Domain or from the Copyright Holder. A
- Package modified in such a way shall still be considered the Standard
- Version.
- .
- 3. You may otherwise modify your copy of this Package in any way,
- provided that you insert a prominent notice in each changed file stating
- how and when you changed that file, and provided that you do at least
- ONE of the following:
- .
- a) place your modifications in the Public Domain or otherwise make them
- Freely Available, such as by posting said modifications to Usenet or
- an equivalent medium, or placing the modifications on a major archive
- site such as uunet.uu.net, or by allowing the Copyright Holder to include
- your modifications in the Standard Version of the Package.
- .
- b) use the modified Package only within your corporation or organization.
- .
- c) rename any non-standard executables so the names do not conflict
- with standard executables, which must also be provided, and provide
- a separate manual page for each non-standard executable that clearly
- documents how it differs from the Standard Version.
- .
- d) make other distribution arrangements with the Copyright Holder.
- .
- 4. You may distribute the programs of this Package in object code or
- executable form, provided that you do at least ONE of the following:
- .
- a) distribute a Standard Version of the executables and library files,
- together with instructions (in the manual page or equivalent) on where
- to get the Standard Version.
- .
- b) accompany the distribution with the machine-readable source of
- the Package with your modifications.
- .
- c) give non-standard executables non-standard names, and clearly
- document the differences in manual pages (or equivalent), together
- with instructions on where to get the Standard Version.
- .
- d) make other distribution arrangements with the Copyright Holder.
- .
- 5. You may charge a reasonable copying fee for any distribution of this
- Package. You may charge any fee you choose for support of this Package.
- You may not charge a fee for this Package itself. However, you may
- distribute this Package in aggregate with other (possibly commercial)
- programs as part of a larger (possibly commercial) software distribution
- provided that you do not advertise this Package as a product of your
- own. You may embed this Package's interpreter within an executable of
- yours (by linking); this shall be construed as a mere form of
- aggregation, provided that the complete Standard Version of the
- interpreter is so embedded.
- .
- 6. The scripts and library files supplied as input to or produced as
- output from the programs of this Package do not automatically fall under
- the copyright of this Package, but belong to whoever generated them, and
- may be sold commercially, and may be aggregated with this Package. If
- such scripts or library files are aggregated with this Package via the
- so-called "undump" or "unexec" methods of producing a binary executable
- image, then distribution of such an image shall neither be construed as
- a distribution of this Package nor shall it fall under the restrictions
- of Paragraphs 3 and 4, provided that you do not represent such an
- executable image as a Standard Version of this Package.
- .
- 7. C subroutines (or comparably compiled subroutines in other
- languages) supplied by you and linked into this Package in order to
- emulate subroutines and variables of the language defined by this
- Package shall not be considered part of this Package, but are the
- equivalent of input as in Paragraph 6, provided these subroutines do
- not change the language in any way that would cause it to fail the
- regression tests for the language.
- .
- 8. Aggregation of this Package with a commercial distribution is always
- permitted provided that the use of this Package is embedded; that is,
- when no overt attempt is made to make this Package's interfaces visible
- to the end user of the commercial distribution. Such use shall not be
- construed as a distribution of this Package.
- .
- 9. The name of the Copyright Holder may not be used to endorse or promote
- products derived from this software without specific prior written permission.
- .
- 10. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR
- IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
- WARRANTIES OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
Copied: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/copyright (from rev 23824, trunk/packages/R/r-bioc-delayedarray/trunk/debian/copyright)
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/copyright (rev 0)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/copyright 2017-06-13 10:40:37 UTC (rev 23825)
@@ -0,0 +1,106 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+Upstream-Name: DelayedArray
+Upstream-Contact: Hervé Pagès <hpages at fredhutch.org>
+Source: https://bioconductor.org/packages/DelayedArray/
+
+Files: *
+Copyright: 2017 Hervé Pagès <hpages at fredhutch.org>
+License: Artistic-2.0
+
+Files: debian/*
+Copyright: 2017 Graham Inggs <ginggs at debian.org>
+License: Artistic-2.0
+
+License: Artistic-2.0
+ The "Artistic License"
+ .
+ Preamble
+ .
+ 1. You may make and give away verbatim copies of the source form of the
+ Standard Version of this Package without restriction, provided that
+ you duplicate all of the original copyright notices and associated
+ disclaimers.
+ .
+ 2. You may apply bug fixes, portability fixes and other modifications
+ derived from the Public Domain or from the Copyright Holder. A
+ Package modified in such a way shall still be considered the Standard
+ Version.
+ .
+ 3. You may otherwise modify your copy of this Package in any way,
+ provided that you insert a prominent notice in each changed file stating
+ how and when you changed that file, and provided that you do at least
+ ONE of the following:
+ .
+ a) place your modifications in the Public Domain or otherwise make them
+ Freely Available, such as by posting said modifications to Usenet or
+ an equivalent medium, or placing the modifications on a major archive
+ site such as uunet.uu.net, or by allowing the Copyright Holder to include
+ your modifications in the Standard Version of the Package.
+ .
+ b) use the modified Package only within your corporation or organization.
+ .
+ c) rename any non-standard executables so the names do not conflict
+ with standard executables, which must also be provided, and provide
+ a separate manual page for each non-standard executable that clearly
+ documents how it differs from the Standard Version.
+ .
+ d) make other distribution arrangements with the Copyright Holder.
+ .
+ 4. You may distribute the programs of this Package in object code or
+ executable form, provided that you do at least ONE of the following:
+ .
+ a) distribute a Standard Version of the executables and library files,
+ together with instructions (in the manual page or equivalent) on where
+ to get the Standard Version.
+ .
+ b) accompany the distribution with the machine-readable source of
+ the Package with your modifications.
+ .
+ c) give non-standard executables non-standard names, and clearly
+ document the differences in manual pages (or equivalent), together
+ with instructions on where to get the Standard Version.
+ .
+ d) make other distribution arrangements with the Copyright Holder.
+ .
+ 5. You may charge a reasonable copying fee for any distribution of this
+ Package. You may charge any fee you choose for support of this Package.
+ You may not charge a fee for this Package itself. However, you may
+ distribute this Package in aggregate with other (possibly commercial)
+ programs as part of a larger (possibly commercial) software distribution
+ provided that you do not advertise this Package as a product of your
+ own. You may embed this Package's interpreter within an executable of
+ yours (by linking); this shall be construed as a mere form of
+ aggregation, provided that the complete Standard Version of the
+ interpreter is so embedded.
+ .
+ 6. The scripts and library files supplied as input to or produced as
+ output from the programs of this Package do not automatically fall under
+ the copyright of this Package, but belong to whoever generated them, and
+ may be sold commercially, and may be aggregated with this Package. If
+ such scripts or library files are aggregated with this Package via the
+ so-called "undump" or "unexec" methods of producing a binary executable
+ image, then distribution of such an image shall neither be construed as
+ a distribution of this Package nor shall it fall under the restrictions
+ of Paragraphs 3 and 4, provided that you do not represent such an
+ executable image as a Standard Version of this Package.
+ .
+ 7. C subroutines (or comparably compiled subroutines in other
+ languages) supplied by you and linked into this Package in order to
+ emulate subroutines and variables of the language defined by this
+ Package shall not be considered part of this Package, but are the
+ equivalent of input as in Paragraph 6, provided these subroutines do
+ not change the language in any way that would cause it to fail the
+ regression tests for the language.
+ .
+ 8. Aggregation of this Package with a commercial distribution is always
+ permitted provided that the use of this Package is embedded; that is,
+ when no overt attempt is made to make this Package's interfaces visible
+ to the end user of the commercial distribution. Such use shall not be
+ construed as a distribution of this Package.
+ .
+ 9. The name of the Copyright Holder may not be used to endorse or promote
+ products derived from this software without specific prior written permission.
+ .
+ 10. THIS PACKAGE IS PROVIDED "AS IS" AND WITHOUT ANY EXPRESS OR
+ IMPLIED WARRANTIES, INCLUDING, WITHOUT LIMITATION, THE IMPLIED
+ WARRANTIES OF MERCHANTIBILITY AND FITNESS FOR A PARTICULAR PURPOSE.
Deleted: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/tests/control
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/trunk/debian/tests/control 2017-06-10 05:29:42 UTC (rev 23821)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/tests/control 2017-06-13 10:40:37 UTC (rev 23825)
@@ -1,3 +0,0 @@
-Tests: bioc
-Depends: @, r-bioc-biocgenerics, r-bioc-genefilter
-Restrictions: allow-stderr
Copied: trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/tests/control (from rev 23824, trunk/packages/R/r-bioc-delayedarray/trunk/debian/tests/control)
===================================================================
--- trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/tests/control (rev 0)
+++ trunk/packages/R/r-bioc-delayedarray/tags/0.2.7-1/tests/control 2017-06-13 10:40:37 UTC (rev 23825)
@@ -0,0 +1,3 @@
+Tests: bioc
+Depends: @, r-cran-runit, r-bioc-biocgenerics, r-bioc-genefilter
+Restrictions: allow-stderr
More information about the debian-med-commit
mailing list