[med-svn] [libbpp-popgen] branch master updated (2dbc1e5 -> 739c138)
Andreas Tille
tille at debian.org
Tue Jun 13 21:08:06 UTC 2017
This is an automated email from the git hooks/post-receive script.
tille pushed a change to branch master
in repository libbpp-popgen.
from 2dbc1e5 Finallise package
new f806605 New upstream version, d/watch: point to github
new fbdbf41 New upstream version 2.3.1
new b34797f Updated version 2.3.1 from 'upstream/2.3.1'
new fe694f7 debhelper 10
new ed6e888 Adapt package name to soversion change
new 739c138 Hardening
The 6 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails. The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.
Summary of changes:
.gitignore | 14 +
AUTHORS.txt | 2 +
CMakeLists.txt | 165 +-
ChangeLog | 10 +
Doxyfile | 2662 ++++++++++++--------
INSTALL.txt | 19 +-
bpp-popgen.spec | 131 +-
debian/changelog | 10 +
debian/compat | 2 +-
debian/control | 16 +-
debian/rules | 9 +-
debian/watch | 5 +-
header.html | 27 +
package.cmake.in | 26 +
src/Bpp/PopGen/{ => DataSet}/AnalyzedLoci.cpp | 0
src/Bpp/PopGen/{ => DataSet}/AnalyzedLoci.h | 4 +-
src/Bpp/PopGen/{ => DataSet}/AnalyzedSequences.cpp | 0
src/Bpp/PopGen/{ => DataSet}/AnalyzedSequences.h | 0
src/Bpp/PopGen/{ => DataSet}/DataSet.cpp | 0
src/Bpp/PopGen/{ => DataSet}/DataSet.h | 7 +-
src/Bpp/PopGen/{ => DataSet}/DataSetTools.cpp | 8 +-
src/Bpp/PopGen/{ => DataSet}/DataSetTools.h | 8 +-
src/Bpp/PopGen/{ => DataSet}/Date.cpp | 0
src/Bpp/PopGen/{ => DataSet}/Date.h | 0
src/Bpp/PopGen/{ => DataSet}/Group.cpp | 8 +-
src/Bpp/PopGen/{ => DataSet}/Group.h | 8 +-
src/Bpp/PopGen/{ => DataSet}/Individual.cpp | 28 +-
src/Bpp/PopGen/{ => DataSet}/Individual.h | 12 +-
.../PopGen/{ => DataSet/Io}/AbstractIDataSet.cpp | 0
src/Bpp/PopGen/{ => DataSet/Io}/AbstractIDataSet.h | 0
.../PopGen/{ => DataSet/Io}/AbstractODataSet.cpp | 0
src/Bpp/PopGen/{ => DataSet/Io}/AbstractODataSet.h | 0
.../PopGen/{ => DataSet/Io/Darwin}/DarwinDon.cpp | 0
src/Bpp/PopGen/{ => DataSet/Io/Darwin}/DarwinDon.h | 4 +-
.../{ => DataSet/Io/Darwin}/DarwinVarSingle.cpp | 0
.../{ => DataSet/Io/Darwin}/DarwinVarSingle.h | 2 +-
.../Io/GeneMapper}/GeneMapperCsvExport.cpp | 0
.../Io/GeneMapper}/GeneMapperCsvExport.h | 6 +-
.../PopGen/{ => DataSet/Io/Genepop}/Genepop.cpp | 0
src/Bpp/PopGen/{ => DataSet/Io/Genepop}/Genepop.h | 6 +-
.../PopGen/{ => DataSet/Io/Genetix}/Genetix.cpp | 0
src/Bpp/PopGen/{ => DataSet/Io/Genetix}/Genetix.h | 6 +-
src/Bpp/PopGen/{ => DataSet/Io}/IDataSet.h | 0
src/Bpp/PopGen/{ => DataSet/Io}/IODataSet.h | 4 +-
src/Bpp/PopGen/{ => DataSet/Io}/ODataSet.h | 0
src/Bpp/PopGen/{ => DataSet/Io}/PopgenlibIO.cpp | 0
src/Bpp/PopGen/{ => DataSet/Io}/PopgenlibIO.h | 2 +-
src/Bpp/PopGen/{ => DataSet}/Locality.h | 0
.../PopGen/{ => DataSet}/MultiSeqIndividual.cpp | 0
src/Bpp/PopGen/{ => DataSet}/MultiSeqIndividual.h | 8 +-
src/Bpp/PopGen/MonolocusGenotypeTools.cpp | 8 +-
src/Bpp/PopGen/MonolocusGenotypeTools.h | 2 +-
src/Bpp/PopGen/MultilocusGenotype.h | 2 +-
src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp | 4 +-
src/Bpp/PopGen/MultilocusGenotypeStatistics.h | 2 +-
src/Bpp/PopGen/PolymorphismSequenceContainer.cpp | 100 +
src/Bpp/PopGen/PolymorphismSequenceContainer.h | 48 +-
.../PopGen/PolymorphismSequenceContainerTools.cpp | 53 +
.../PopGen/PolymorphismSequenceContainerTools.h | 25 +-
src/Bpp/PopGen/SequenceStatistics.cpp | 450 ++--
src/Bpp/PopGen/SequenceStatistics.h | 142 +-
src/CMakeLists.txt | 131 +-
62 files changed, 2447 insertions(+), 1739 deletions(-)
create mode 100644 .gitignore
create mode 100644 header.html
create mode 100644 package.cmake.in
rename src/Bpp/PopGen/{ => DataSet}/AnalyzedLoci.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet}/AnalyzedLoci.h (98%)
rename src/Bpp/PopGen/{ => DataSet}/AnalyzedSequences.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet}/AnalyzedSequences.h (100%)
rename src/Bpp/PopGen/{ => DataSet}/DataSet.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet}/DataSet.h (99%)
rename src/Bpp/PopGen/{ => DataSet}/DataSetTools.cpp (90%)
rename src/Bpp/PopGen/{ => DataSet}/DataSetTools.h (89%)
rename src/Bpp/PopGen/{ => DataSet}/Date.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet}/Date.h (100%)
rename src/Bpp/PopGen/{ => DataSet}/Group.cpp (98%)
rename src/Bpp/PopGen/{ => DataSet}/Group.h (98%)
rename src/Bpp/PopGen/{ => DataSet}/Individual.cpp (98%)
rename src/Bpp/PopGen/{ => DataSet}/Individual.h (98%)
rename src/Bpp/PopGen/{ => DataSet/Io}/AbstractIDataSet.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io}/AbstractIDataSet.h (100%)
rename src/Bpp/PopGen/{ => DataSet/Io}/AbstractODataSet.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io}/AbstractODataSet.h (100%)
rename src/Bpp/PopGen/{ => DataSet/Io/Darwin}/DarwinDon.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io/Darwin}/DarwinDon.h (96%)
rename src/Bpp/PopGen/{ => DataSet/Io/Darwin}/DarwinVarSingle.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io/Darwin}/DarwinVarSingle.h (98%)
rename src/Bpp/PopGen/{ => DataSet/Io/GeneMapper}/GeneMapperCsvExport.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io/GeneMapper}/GeneMapperCsvExport.h (97%)
rename src/Bpp/PopGen/{ => DataSet/Io/Genepop}/Genepop.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io/Genepop}/Genepop.h (95%)
rename src/Bpp/PopGen/{ => DataSet/Io/Genetix}/Genetix.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io/Genetix}/Genetix.h (95%)
rename src/Bpp/PopGen/{ => DataSet/Io}/IDataSet.h (100%)
rename src/Bpp/PopGen/{ => DataSet/Io}/IODataSet.h (96%)
rename src/Bpp/PopGen/{ => DataSet/Io}/ODataSet.h (100%)
rename src/Bpp/PopGen/{ => DataSet/Io}/PopgenlibIO.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet/Io}/PopgenlibIO.h (99%)
rename src/Bpp/PopGen/{ => DataSet}/Locality.h (100%)
rename src/Bpp/PopGen/{ => DataSet}/MultiSeqIndividual.cpp (100%)
rename src/Bpp/PopGen/{ => DataSet}/MultiSeqIndividual.h (99%)
--
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/libbpp-popgen.git
More information about the debian-med-commit
mailing list