[med-svn] [libbpp-popgen] 03/06: Updated version 2.3.1 from 'upstream/2.3.1'

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a commit to branch master
in repository libbpp-popgen.

commit b34797fb02fd0c0d65a667f46865aec72416bb04
Merge: f806605 fbdbf41
Author: Andreas Tille <tille at debian.org>
Date:   Tue Jun 13 22:56:55 2017 +0200

    Updated version 2.3.1 from 'upstream/2.3.1'
    
    with Debian dir 372e3028cb69dddbb4f40a0f27da34db40490b89

 .gitignore                                         |   14 +
 AUTHORS.txt                                        |    2 +
 CMakeLists.txt                                     |  165 +-
 ChangeLog                                          |   10 +
 Doxyfile                                           | 2662 ++++++++++++--------
 INSTALL.txt                                        |   19 +-
 bpp-popgen.spec                                    |  131 +-
 header.html                                        |   27 +
 package.cmake.in                                   |   26 +
 src/Bpp/PopGen/{ => DataSet}/AnalyzedLoci.cpp      |    0
 src/Bpp/PopGen/{ => DataSet}/AnalyzedLoci.h        |    4 +-
 src/Bpp/PopGen/{ => DataSet}/AnalyzedSequences.cpp |    0
 src/Bpp/PopGen/{ => DataSet}/AnalyzedSequences.h   |    0
 src/Bpp/PopGen/{ => DataSet}/DataSet.cpp           |    0
 src/Bpp/PopGen/{ => DataSet}/DataSet.h             |    7 +-
 src/Bpp/PopGen/{ => DataSet}/DataSetTools.cpp      |    8 +-
 src/Bpp/PopGen/{ => DataSet}/DataSetTools.h        |    8 +-
 src/Bpp/PopGen/{ => DataSet}/Date.cpp              |    0
 src/Bpp/PopGen/{ => DataSet}/Date.h                |    0
 src/Bpp/PopGen/{ => DataSet}/Group.cpp             |    8 +-
 src/Bpp/PopGen/{ => DataSet}/Group.h               |    8 +-
 src/Bpp/PopGen/{ => DataSet}/Individual.cpp        |   28 +-
 src/Bpp/PopGen/{ => DataSet}/Individual.h          |   12 +-
 .../PopGen/{ => DataSet/Io}/AbstractIDataSet.cpp   |    0
 src/Bpp/PopGen/{ => DataSet/Io}/AbstractIDataSet.h |    0
 .../PopGen/{ => DataSet/Io}/AbstractODataSet.cpp   |    0
 src/Bpp/PopGen/{ => DataSet/Io}/AbstractODataSet.h |    0
 .../PopGen/{ => DataSet/Io/Darwin}/DarwinDon.cpp   |    0
 src/Bpp/PopGen/{ => DataSet/Io/Darwin}/DarwinDon.h |    4 +-
 .../{ => DataSet/Io/Darwin}/DarwinVarSingle.cpp    |    0
 .../{ => DataSet/Io/Darwin}/DarwinVarSingle.h      |    2 +-
 .../Io/GeneMapper}/GeneMapperCsvExport.cpp         |    0
 .../Io/GeneMapper}/GeneMapperCsvExport.h           |    6 +-
 .../PopGen/{ => DataSet/Io/Genepop}/Genepop.cpp    |    0
 src/Bpp/PopGen/{ => DataSet/Io/Genepop}/Genepop.h  |    6 +-
 .../PopGen/{ => DataSet/Io/Genetix}/Genetix.cpp    |    0
 src/Bpp/PopGen/{ => DataSet/Io/Genetix}/Genetix.h  |    6 +-
 src/Bpp/PopGen/{ => DataSet/Io}/IDataSet.h         |    0
 src/Bpp/PopGen/{ => DataSet/Io}/IODataSet.h        |    4 +-
 src/Bpp/PopGen/{ => DataSet/Io}/ODataSet.h         |    0
 src/Bpp/PopGen/{ => DataSet/Io}/PopgenlibIO.cpp    |    0
 src/Bpp/PopGen/{ => DataSet/Io}/PopgenlibIO.h      |    2 +-
 src/Bpp/PopGen/{ => DataSet}/Locality.h            |    0
 .../PopGen/{ => DataSet}/MultiSeqIndividual.cpp    |    0
 src/Bpp/PopGen/{ => DataSet}/MultiSeqIndividual.h  |    8 +-
 src/Bpp/PopGen/MonolocusGenotypeTools.cpp          |    8 +-
 src/Bpp/PopGen/MonolocusGenotypeTools.h            |    2 +-
 src/Bpp/PopGen/MultilocusGenotype.h                |    2 +-
 src/Bpp/PopGen/MultilocusGenotypeStatistics.cpp    |    4 +-
 src/Bpp/PopGen/MultilocusGenotypeStatistics.h      |    2 +-
 src/Bpp/PopGen/PolymorphismSequenceContainer.cpp   |  100 +
 src/Bpp/PopGen/PolymorphismSequenceContainer.h     |   48 +-
 .../PopGen/PolymorphismSequenceContainerTools.cpp  |   53 +
 .../PopGen/PolymorphismSequenceContainerTools.h    |   25 +-
 src/Bpp/PopGen/SequenceStatistics.cpp              |  450 ++--
 src/Bpp/PopGen/SequenceStatistics.h                |  142 +-
 src/CMakeLists.txt                                 |  131 +-
 57 files changed, 2422 insertions(+), 1722 deletions(-)

-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/libbpp-popgen.git