[med-svn] [libbpp-raa] 03/06: Updated version 2.3.1 from 'upstream/2.3.1'

[Andreas Tille]

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tille pushed a commit to branch master
in repository libbpp-raa.

commit 1761d4beb5a3b4235c51a806e05aae1d5e66e0db
Merge: e9c9edc 56807c2
Author: Andreas Tille <tille at debian.org>
Date:   Wed Jun 14 11:44:10 2017 +0200

    Updated version 2.3.1 from 'upstream/2.3.1'
    
    with Debian dir c1a7f5c33892cc1272ea0f485ef5b64cb94b7498

 CMakeLists.txt                 |  194 +-
 ChangeLog                      |    4 +
 Doxyfile                       | 2662 +++++++++++--------
 INSTALL.txt                    |   19 +-
 bpp-raa.spec                   |  132 +-
 header.html                    |   27 +
 package.cmake.in               |   26 +
 src/Bpp/Raa.all                |    6 -
 src/Bpp/Raa/RAA.cpp            |  958 ++++---
 src/Bpp/Raa/RAA.h              |  861 +++---
 src/Bpp/Raa/RAA_acnuc.c        | 5766 ++++++++++++++++++++++------------------
 src/Bpp/Raa/RAA_acnuc.h        |  421 +--
 src/Bpp/Raa/RaaList.cpp        |  103 +-
 src/Bpp/Raa/RaaList.h          |  270 +-
 src/Bpp/Raa/RaaSeqAttributes.h |  121 +-
 src/Bpp/Raa/RaaSpeciesTree.cpp |  131 +-
 src/Bpp/Raa/RaaSpeciesTree.h   |  237 +-
 src/Bpp/Raa/md5.c              |  409 +--
 src/Bpp/Raa/misc_acnuc.c       |   62 +-
 src/Bpp/Raa/parser.c           |  166 +-
 src/Bpp/Raa/parser.h           |   19 +-
 src/Bpp/Raa/zsockr.c           |  212 +-
 src/CMakeLists.txt             |   93 +-
 23 files changed, 7101 insertions(+), 5798 deletions(-)

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