[med-svn] [python-cogent] branch master created (now f09e5f9)

[Andreas Tille]

This is an automated email from the git hooks/post-receive script.

tille pushed a change to branch master
in repository python-cogent.

        at  f09e5f9   Move packaging from SVN to Git

This branch includes the following new commits:

       new  6844690   Initial attempt to package pycogent.
       new  03e9f56   Series of updates towards lintian-cleanliness
       new  0e894ef   Fixed debian/watch
       new  8d120cc   :) corrected for wrong location of source folder
       new  98eb435   Series of updates.
       new  764c652   PyCogent is now fully functional from what I observe. What is still missing for an upload is some extra confirmation on parts of the code if it may be redistributed.
       new  1829cfe   Cleanup and rename.
       new  a2afdf7   Improving build dependencies.
       new  e9317d3   Correcting for group management.
       new  a03d791   Uploaded new version after confirmation by upstream that redistribution is ok - it has to go to non-free because of a limit to academia
       new  9ac7666   Applied changes of NMU
       new  636ec4a   Commit current state of packaging
       new  b086286   Clarified license of two remaining non-free files and moved package to main; use python-support instead of python-central
       new  352c374   Build ocumentation as html, use short dh rules file instead of cdbs to simplify moving around the docs; uploaded to main instead of non-free
       new  0041134   Move to dh_python2 and thus remove Python 2.5 dependency, debhelper 8
       new  b1880af   Update to 1.5.1 of python-cogent
       new  c9e1cd4   Updated to 1.5.1-2
       new  2595ba0   Citation of the day
       new  df81d3f   Fix Vcs fields globally in all remaining packages because I'm bored by warnings in logfiles when investigating machine readable files of not yet uploaded packages
       new  1eb5625   New upstream, and I needed the new python-cogent to support the latest QIIME Some small changes to the build for 1.5.3
       new  e1b2618   new upstream version
       new  51a0101   Add -f option to rm statements to not fail if files to be remove do not exist
       new  64561bd   Move debian/upstream to debian/upstream/metadata
       new  86a9f6a   Patches to get cogent working with newer cd-hit and parsinsert
       new  a15e441   cme fix dpkg-control; Priority: optional (except for *-dbg)
       new  6eb1a78   DEP5
       new  7327cee   Adapted to Github to make sure we will notice new releases
       new  f652169   DEP3
       new  52f9e21   README.source removed since redundant
       new  c5508af   Refreshed patches
       new  a43f010   Start working on the test suite
       new  dd7ce2a   Keep on working with the unit test
       new  54652bf   Try running the test suite but several issues, patches deactivated for the moment
       new  b055e5c   cme fix dpkg-control
       new  7a5b14d   Adapt to the naming scheme of cd-hit inside Debian
       new  db1458b   Switch from python-support to pybuild
       new  e7a036c   Upload to unstable
       new  71f7cf6     * Build-Depends: bwa [any-amd64] and exclude bwa tests for other     architectures     Closes: #808799   * Really activate tests but only those that are known to pass.  All     failed tests excluded for the moment - more detailed investigation     is needed   * Drop debug package in favour of automatically generated one
       new  611143a   Some polishing and upload to unstable
       new  d2625ea   Also deal with infernal that only exists on [any-amd64 any-i386]
       new  d91e243   I now checked whether Build-Depends are available on all architectures ... hopefully correct now
       new  84e361e   Ignore a few test failures on certain architectures to at least document the problem debian/README.source was created
       new  6f45cce   Hopefully last try of this series - if some arch might remain in failing I'll consider removing this arch
       new  07ee23c   Last attempt to burn autobuilders cpu cycles by excluding randomly failing tests :-(
       new  795c631   mothur does not exist on s390x
       new  0b3e502   exclude test failed on i386 also on kfreebsd-i386
       new  88f1309   Fix watch file, new upstream version
       new  92a1466   Fix homepage, cme fix dpkg-control
       new  c524f80   revert cd-hit name change in Debian
       new  58f1350   hardening=+bindnow, Build-Depends: cdbfasta
       new  390c3b5   Refresh patch
       new  2c42904   Exclude some cd-hit tests since python-cogent requires an old version of cd-hit (see issue #101)
       new  c0b226b   Do real testing after lost testcases are excluded
       new  2259fd8   Drop unused patches
       new  b623856   Upload to unstable
       new  1e102c0   Properly test fasttree
       new  9844b3d   Exclude some tests on some architectures
       new  e901505   Try to support rdp_classifier (but failed - no idea why)
       new  e7b2f09   Upload to unstable
       new  fecdcc2   (Build-)Depends python-matplotlib, Some more tests for certain architectures excluded
       new  d5dc951   Need to exclude further tests on armhf and mips
       new  27154c4   Update d/README.Debian with todo list
       new  30056ed   Debhelper 10
       new  346b016   d/watch: version=4
       new  97db790   Skip some tests that do not run reproducibly at build time
       new  a8c148b     * Skip more tests to enable build on mips & mips64el   * Skip tests that are not working any more since ncbi-tools6 >=6.1.20160908-1
       new  b50a2e2   Skip another test to enable build on mips
       new  a1b004a   Skip test with incompatibilities to Numpy 1.12.0~b1
       new  5905bd4   add autopkgtest test-suite (without tests known to fail)
       new  7e5a3a6   New upstream version 1.9
       new  d017e05   Merge tag 'upstream/1.9'
       new  6874772   Re-add debian/ dir
       new  f09e5f9   Move packaging from SVN to Git

The 73 revisions listed above as "new" are entirely new to this
repository and will be described in separate emails.  The revisions
listed as "adds" were already present in the repository and have only
been added to this reference.


-- 
Alioth's /usr/local/bin/git-commit-notice on /srv/git.debian.org/git/debian-med/python-cogent.git